Transcript Information: S_Transcript_136087.p1


Annotated TAIR IDAT5G11890.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT1G17620.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:3831770-3832633 | Forward length=287
E-Value3E-24
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.7216615094675
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 11.8344421778179
Replicate 20
Replicate 31.7190199681437
Condition 3: 24 Hour
Replicate 13.7582595252635
Replicate 24.7520895240728
Replicate 32.1696382283971


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_136087.p1 GENE.S_Transcript_136087~~S_Transcript_136087.p1 ORF type:complete len:186 (+),score=1.12 S_Transcript_136087:763-1320(+)
ATGGGTAATTTAATAAATTATATGCGGTTTCTGTTATCTACGTACAGGATCTCGAAGTTCAACCTGACGACAACAGATTCCTCCGGGTTCTCCCAGCTGACGTCGAAACTCGACTTCACGCTGACGGCCAAGAACCCGAACAAGAAGAAGATCGTGTTTGTGTACAACCCCTTCATCATCGACGTGACGGTGGGCAACGGAGTCGACGCCGGTAACGCCACGCTGCCGGGGTTCACACACATAGAGGGGAACACCACCATCATCAAAGGAACAGTCATAAGTGACCCGACACGGGACTTCGACACGGACACGGTGTCGTCGCTCCGGTCAGATCTGAGCAAGAAGGGTGGGTTCCCTATAGCAGTAGAAGCAGACACGCAAGTTGAGTTTCAAATTGGGAAAATCAAGACCAAACGTGTCGGGGTGCGTGTCACATGTGAAGGGATACGTGGGTTTCAGCCTAAAAATGCTACAGCTAAGACACCGACACCAGGGACTACTACTGGAGCTAAGTGTAAGGTTGATCTCAGAATTAAGATCTGGAAGTTTACTTTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_136087.p1 GENE.S_Transcript_136087~~S_Transcript_136087.p1 ORF type:complete len:186 (+),score=1.12 S_Transcript_136087:763-1320(+)
MGNLINYMRFLLSTYRISKFNLTTTDSSGFSQLTSKLDFTLTAKNPNKKKIVFVYNPFIIDVTVGNGVDAGNATLPGFTHIEGNTTIIKGTVISDPTRDFDTDTVSSLRSDLSKKGGFPIAVEADTQVEFQIGKIKTKRVGVRVTCEGIRGFQPKNATAKTPTPGTTTGAKCKVDLRIKIWKFTF*

Click here to download the sequence:
Link to NCBI Protein BLAST