Transcript Information: S_Transcript_136541.p1


Annotated TAIR IDAT5G48330.1
Annotated Gene NameRegulator of chromosome condensation (RCC1) family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19585989-19587729 | Forward length=455
E-Value3.2E-177
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.6804051252056
Replicate 25.4141814865067
Replicate 35.0915529065155
Condition 2: 8 Hour
Replicate 17.2829042596344
Replicate 27.091281266171
Replicate 36.1898780366203
Condition 3: 24 Hour
Replicate 16.3435039993136
Replicate 25.8397551301018
Replicate 37.11787756218


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_136541.p1 GENE.S_Transcript_136541~~S_Transcript_136541.p1 ORF type:complete len:489 (-),score=105.50,RCC1|PF00415.14|2.4e+03,RCC1|PF00415.14|4e-06,RCC1|PF00415.14|1.8e-09,RCC1|PF00415.14|1.3e-10,RCC1|PF00415.14|0.41,RCC1|PF00415.14|1.6,RCC1|PF00415.14|0.00016,RCC1|PF00415.14|0.27,RCC1|PF00415.14|5.4e-11,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|2.2e-11,RCC1_2|PF13540.2|5.6,RCC1_2|PF13540.2|0.24,RCC1_2|PF13540.2|0.0007,RCC1_2|PF13540.2|1.8e+02,RCC1_2|PF13540.2|0.00064,RCC1_2|PF13540.2|31 S_Transcript_136541:190-1656(-)
ATGACAATGGAGAGTCTTATGAACATCTCATGGGTGGAAACACTTCTAAGGCTCCCCTGCAAATTGATTCAGTTCAGGAAATCTCCTGCCACGTCTGTATTCTGTTTAGAGATGCTGCGATCCTTTTGCAAGAATCACAGTATCACTGCTTTCTTCTCGAGAAGTAGATACTTTAGTGGCAGGACTGGCAATGGGAATGTCAGTTCGTCATTTGCAGTCATGAGCTCTGGGGATGGAAGTCATGGTGCTCTGGGTCTACCATCTTCCCTAATTGGTGTCGGAGCAGACGCGTATGAGCCAACTATAGTTGCTGGGCTCCCATCTGATGTGGTGAGTGTGAGTGCTGGGCATTACCACTCTCTTGCTTTGACAGCAAAAGGTGAGTTGTGGGCTTGGGGTAGAAATGATGAGGGCCAGCTTGGTAGAGGTCTACTTGCACCCAGGCATTCATGGAATGAACCAAAGCACGTGGAAGGACTAAAAGATGTAAAAGTTCGAGCTGCATTTGCATCTGGTGTTATTTCTGTTGCCATTGATGATGTTGGATCTATGTGGACATGGGGACGGTCCAAGCGTGGGCAGCTTGGGCTTGGGAACGGAGTCACCGAGGCTGTTGTACCGACAAGAGTTGAAGCCCTTGCACGAGAAGATATAGCCAAGGTTTCACTAGGTTGGGGTCACGTGCTTGCACAAACTGTTGACAGAAAATTGTATGGATGGGGTTACTCAGCAGATGGTAGAGTAGGACGACTTGGAGACACTGTAAAGTCATCACCATTGGATTCAAGAGCAGAGCTACCCCGAAGCCGTGAAATGAATACTAATGAGGCCCTACAAGTTGCTGAGAAGCTCGTCTTAGAAAGCATGGACAAGGAAAACGACATGCCAATTGCCTGGGAACCTTACTCAATAGATGAAGTGCAGTCCATTGCCGTCACTGATGTTTCCTGTGGCCTTGATCATTCTTTAATCATTTGCCGTGATGGCACCACGCTAAGTGGTGGGAGTGACACATATGGTCAGTTGGGAAGAGAGAAACAAGATATAGGCCTTTTTCCCGTTGACATAGACTTTTGTCCATCGTCTATTGCCTGTGGGCTCGGACATTCCATAGCGATCTGTACAATGCCAGCTTCAGACATTGACAATGATCCTAGAAAAGTCACTGTCTCTTGGGGCTGGAACCAGTGCTCTCAGCTAGGAAGAGCAGGGCCAGAGAGCAAAGCTTTGGTGGTGGAAGGTTTGATTGAGGAGATACCGGCCGCAGTTTCTGCTGGTCGTGTGCATTCACTTTGTGTCACTGTCAACGGGGAGTTGTGGTCTTGGGGCTGTGGTAAAAATGGTAGGCTTGGTTTAGGCAGCTCCTTTGATGAACCAGAGCCTGTCCTTGTCGATTGTGGAGGTCATAGAGTTGTCCAAGCTGCAGCTGGCTTTGATCACAATCTGCTCTTGGTTGCTGAATCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_136541.p1 GENE.S_Transcript_136541~~S_Transcript_136541.p1 ORF type:complete len:489 (-),score=105.50,RCC1|PF00415.14|2.4e+03,RCC1|PF00415.14|4e-06,RCC1|PF00415.14|1.8e-09,RCC1|PF00415.14|1.3e-10,RCC1|PF00415.14|0.41,RCC1|PF00415.14|1.6,RCC1|PF00415.14|0.00016,RCC1|PF00415.14|0.27,RCC1|PF00415.14|5.4e-11,RCC1_2|PF13540.2|1.5e+03,RCC1_2|PF13540.2|2.2e-11,RCC1_2|PF13540.2|5.6,RCC1_2|PF13540.2|0.24,RCC1_2|PF13540.2|0.0007,RCC1_2|PF13540.2|1.8e+02,RCC1_2|PF13540.2|0.00064,RCC1_2|PF13540.2|31 S_Transcript_136541:190-1656(-)
MTMESLMNISWVETLLRLPCKLIQFRKSPATSVFCLEMLRSFCKNHSITAFFSRSRYFSGRTGNGNVSSSFAVMSSGDGSHGALGLPSSLIGVGADAYEPTIVAGLPSDVVSVSAGHYHSLALTAKGELWAWGRNDEGQLGRGLLAPRHSWNEPKHVEGLKDVKVRAAFASGVISVAIDDVGSMWTWGRSKRGQLGLGNGVTEAVVPTRVEALAREDIAKVSLGWGHVLAQTVDRKLYGWGYSADGRVGRLGDTVKSSPLDSRAELPRSREMNTNEALQVAEKLVLESMDKENDMPIAWEPYSIDEVQSIAVTDVSCGLDHSLIICRDGTTLSGGSDTYGQLGREKQDIGLFPVDIDFCPSSIACGLGHSIAICTMPASDIDNDPRKVTVSWGWNQCSQLGRAGPESKALVVEGLIEEIPAAVSAGRVHSLCVTVNGELWSWGCGKNGRLGLGSSFDEPEPVLVDCGGHRVVQAAAGFDHNLLLVAES*

Click here to download the sequence:
Link to NCBI Protein BLAST