Transcript Information: S_Transcript_13837.p2


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value1.2E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.682390465545
Replicate 211.467664628765
Replicate 315.629437358984
Condition 2: 8 Hour
Replicate 120.843460592452
Replicate 222.624637889893
Replicate 319.148134289221
Condition 3: 24 Hour
Replicate 120.363874440384
Replicate 218.694443447157
Replicate 322.372095884764


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13837.p2 GENE.S_Transcript_13837~~S_Transcript_13837.p2 ORF type:complete len:177 (+),score=30.39,Nucleopor_Nup85|PF07575.9|4.1e-24 S_Transcript_13837:1384-1914(+)
ATGTTTGTTGTTCGACTATCCCTTTTTTATACTCTATATGTTGTGTGCATAGTATTTTTTAAAGTAATTAATAAATGTGTTCGAGTTATCAGGTGGGAGCATGTCATGGAGTATAGCCAGGAGATAAACTCTCTTCTTGGTACCACAAAGTCAGTCACTGGTTCAACAGTTGATGACCCAAGAACTATTGTGAAGGCAGATGAGGAGCCAAGCAGTTTAAAGGCTGCATGGGAGCTGATGGAAATTTTTTATGCAGACAAACAGTTTCAAGCTTGGCTTCCTGAACGTTTTGTCGATTGGTTAGATGACTATGCCCTCTTTTCAGAAACTCAGTCCACAGTGCACTCAAAACTTTTGGATTTGCAACGTGACCTTTTGCGCTTTGAGGTGATTGAGGATCATCCAAAATACTGGGATTGCTTATCATCTGCTCTAGCAGTTGGCTGGCTGGAGGTTGTGGTGAAATTACTGCGCTTAAATGGGTCTTATCAACTTGATCAGCTCGGTAGACGTGAGGGATGGACTCAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13837.p2 GENE.S_Transcript_13837~~S_Transcript_13837.p2 ORF type:complete len:177 (+),score=30.39,Nucleopor_Nup85|PF07575.9|4.1e-24 S_Transcript_13837:1384-1914(+)
MFVVRLSLFYTLYVVCIVFFKVINKCVRVIRWEHVMEYSQEINSLLGTTKSVTGSTVDDPRTIVKADEEPSSLKAAWELMEIFYADKQFQAWLPERFVDWLDDYALFSETQSTVHSKLLDLQRDLLRFEVIEDHPKYWDCLSSALAVGWLEVVVKLLRLNGSYQLDQLGRREGWTQ*

Click here to download the sequence:
Link to NCBI Protein BLAST