Transcript Information: S_Transcript_13842.p1


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value2E-90
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.911341554753
Replicate 213.225138058624
Replicate 312.365016237869
Condition 2: 8 Hour
Replicate 118.599133032272
Replicate 222.943856133356
Replicate 320.346945441119
Condition 3: 24 Hour
Replicate 114.149526806408
Replicate 213.649795608482
Replicate 313.829132301669


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13842.p1 GENE.S_Transcript_13842~~S_Transcript_13842.p1 ORF type:5prime_partial len:352 (+),score=73.53,Nucleopor_Nup85|PF07575.9|3e-37 S_Transcript_13842:2-1057(+)
ACCCCCCAAATTTCCAAAACCCCCCAAATTTCCAAAACCCCCCAAATTTCCAAAACCCTCTCATCCTCTGCGGCGAAGATGCCGGCACCGACGTCAGATTCCGACACTCGATTCTCTCTCCTCCCAAAACCATCCTCCACCACCGACGACCCTCCGCTGCCAGTGACATACCCTCTCCGCCACTCTCTCTCCTCCCCAATCCATCGAATCGCCATCAACTGGTCTCGTGGCAACACTCTCCGTGTCTCTCTCTTCTCAAAACCTAACCCTAACTCCTCCGAATCCGACGATTCTGGCGGAAACGTCGTCGAGTTCAAGCTCGGTGGCGCCGGTAATGGCGGAATCAAAGATGATGATGCTCAGTGGAGGAGGATTGTGTACGGTTCTGTTAAACCTTATGCCGTGTTTCAGAACAAGAAGAACTCCGCTTTGGCTATGGCTAAGCTTCCTGTTGGAGCTCTTTCCAATGTCGACTGGTGGGAGCATGTCATGGAGTATAGCCAGGAGATAAACTCTCTTCTTGGTACCACAAAGTCAGTCACTGGTTCAACAGTTGATGACCCAAGAACTATTGTGAAGGCAGATGAGGAGCCAAGCAGTTTAAAGGCTGCATGGGAGCTGATGGAAATTTTTTATGCAGACAAACAGTTTCAAGCTTGGCTTCCTGAACGTTTTGTCGATTGGTTAGATGACTATGCCCTCTTTTCAGAAACTCAGTCCACAGTGCACTCAAAACTTTTGGATTTGCAACGTGACCTTTTGCGCTTTGAGGTGATTGAGGATCATCCAAAATACTGGGATTGCTTATCATCTGCTCTAGCAGTTGGCTGGCTGGAGGTTGTGGTGAAATTACTGCGCTTAAATGGGTCTTATCAACTTGATCAGCTTGGTAGACGTGAGACAGAAAATGGACTTGTTGAAGCAGTTGTTCTTGTTTCTAAGATGTCACGTCTACGTCCTGACTTACCGGAAGGAAGGTTGGGTGAATGTTATGGAAATAAGACTGATTTCATCAAGGCTTGGGAGACATGGCGAGCACGAGTTACCAAGGTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13842.p1 GENE.S_Transcript_13842~~S_Transcript_13842.p1 ORF type:5prime_partial len:352 (+),score=73.53,Nucleopor_Nup85|PF07575.9|3e-37 S_Transcript_13842:2-1057(+)
TPQISKTPQISKTPQISKTLSSSAAKMPAPTSDSDTRFSLLPKPSSTTDDPPLPVTYPLRHSLSSPIHRIAINWSRGNTLRVSLFSKPNPNSSESDDSGGNVVEFKLGGAGNGGIKDDDAQWRRIVYGSVKPYAVFQNKKNSALAMAKLPVGALSNVDWWEHVMEYSQEINSLLGTTKSVTGSTVDDPRTIVKADEEPSSLKAAWELMEIFYADKQFQAWLPERFVDWLDDYALFSETQSTVHSKLLDLQRDLLRFEVIEDHPKYWDCLSSALAVGWLEVVVKLLRLNGSYQLDQLGRRETENGLVEAVVLVSKMSRLRPDLPEGRLGECYGNKTDFIKAWETWRARVTKV*

Click here to download the sequence:
Link to NCBI Protein BLAST