Transcript Information: S_Transcript_13843.p1


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value5.8E-235
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 115.879275165274
Replicate 216.145742046248
Replicate 315.260309690796
Condition 2: 8 Hour
Replicate 126.202298705667
Replicate 228.929916536195
Replicate 328.184779785381
Condition 3: 24 Hour
Replicate 115.395874227259
Replicate 213.051716853738
Replicate 313.790847564544


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13843.p1 GENE.S_Transcript_13843~~S_Transcript_13843.p1 ORF type:complete len:481 (+),score=81.78,Nucleopor_Nup85|PF07575.9|6.4e-109 S_Transcript_13843:2865-4307(+)
ATGGGATACATTTTATGCTATATAGGCATGAATTTTTTACTAGTTTCATTTTGTGCTGGTCCACTTATGATCTTACAACTTTTGAATTTGTTGTTACAGACAGAAAATGGACTTGTTGAAGCAGTTGTTCTTGTTTCTAAGATGTCACGTCTACGTCCTGACTTACCGGAAGGAAGGTTGGGTGAATGTTATGGAAATAAGACTGATTTCATCAAGGCTTGGGAGACATGGCGAGCACGAGTTACCAAGCTGGAGTGTAGTGCTTTCTGGGTTGAATGTGGCCATCAGCAAACCAGAGAGGGTTTGAGAAGAATGCTACAGATTATGCTAGGAAATGCTGAGCATCTTTCTGCAACGACGTGTAACTGGGTTGAACTTTATGTATCTCATTTTCTATACATCAGGCCCTTCACTGTGGGTTTAGAAAGTATGTACAGCCTAGCTCAGAAATGCATCCAGTTGAAGCCTGTGTCCCATTCCAATAGCCTGATGGGACTTTTAACTGGAATACTTGGAGAGAATACTGAGGTCGTGTTAGCAGAATGCTCCAAAGCTTTTGGCCCATGGATGGTCACCCATGCCATAGAGTTATTGACAGCCGGCAATGATCAGTCAGAAATGCTTTTGCATGAAGTACACCACAACCTGGGGGGAGTTAGTATTGAGGAGCTCCATCGACTTGTGTATGCTCAAGTCCTAGCCTCTCATCAACTAACCTGGCAGATTGCTCCAGTGTACTTAATGTCATGCTTGAAGCCGGGAATGGGTTTGTTGGAGATCTTACTATACAGGCAACCAGTACAACACAAGCAAGGATTGCTTAAGAACCTAGAGATCTGCCGTCTGTATGAACTTGAAACCGTCAGTTCAAACATCATGAAGATTGCTGGGGTACATCACTGGAAACATGGTCGGAAAGGTTCTGGTATCTATTGGCTTCAACAAGCTCAGGATGAGATTCGCCTCAATAAAATTGCTCAACAGCTGTTTGATTTTGTTGGGAAATCAATATCTGAAGAAAGTTTCAAACAATGGGAAGGATTGATCGAGCTACTAGGTTCTGACACAAGAACTGCTGGGGGTCTTGAATTTCTGCACAAGTACAGAGATTTTATAAAGTCGCTGCAGCAGGTTTGTGATGGAAAGACTAATGATGCTGCTCGGCAAGCTGTAGAATCACTCATTCTGCTCATGAAAAATCCATCTACACCTCAGCGTTTCTGGCTACCAGTTCTTTATGACGCGTTGAAGCTGCTTACATGGCGGGAGGGTCCTCTTCTTGATGTCTCACAAACCAGCCTATTGTTGAATAAGCTGCAAGAGCTATCCATGGCAAGGCTGCGCCCTGACTATGTTGAGGCAGACCTGCCACCTCAAGCGGTGGATACTGTGAGGCTGGCTTTGGCTACAAATCTTGGACGTGCTATTCTTGAAGAGCAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13843.p1 GENE.S_Transcript_13843~~S_Transcript_13843.p1 ORF type:complete len:481 (+),score=81.78,Nucleopor_Nup85|PF07575.9|6.4e-109 S_Transcript_13843:2865-4307(+)
MGYILCYIGMNFLLVSFCAGPLMILQLLNLLLQTENGLVEAVVLVSKMSRLRPDLPEGRLGECYGNKTDFIKAWETWRARVTKLECSAFWVECGHQQTREGLRRMLQIMLGNAEHLSATTCNWVELYVSHFLYIRPFTVGLESMYSLAQKCIQLKPVSHSNSLMGLLTGILGENTEVVLAECSKAFGPWMVTHAIELLTAGNDQSEMLLHEVHHNLGGVSIEELHRLVYAQVLASHQLTWQIAPVYLMSCLKPGMGLLEILLYRQPVQHKQGLLKNLEICRLYELETVSSNIMKIAGVHHWKHGRKGSGIYWLQQAQDEIRLNKIAQQLFDFVGKSISEESFKQWEGLIELLGSDTRTAGGLEFLHKYRDFIKSLQQVCDGKTNDAARQAVESLILLMKNPSTPQRFWLPVLYDALKLLTWREGPLLDVSQTSLLLNKLQELSMARLRPDYVEADLPPQAVDTVRLALATNLGRAILEEQ*

Click here to download the sequence:
Link to NCBI Protein BLAST