Transcript Information: S_Transcript_13844.p1


Annotated TAIR IDAT4G32910.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:15881364-15885210 | Forward length=716
E-Value2E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.6949874668537
Replicate 24.189137257756
Replicate 34.7857732875166
Condition 2: 8 Hour
Replicate 15.3988329916792
Replicate 24.5310073194383
Replicate 39.0389986679351
Condition 3: 24 Hour
Replicate 15.9451265195921
Replicate 25.0204645896972
Replicate 34.4697293882484


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_13844.p1 GENE.S_Transcript_13844~~S_Transcript_13844.p1 ORF type:3prime_partial len:158 (+),score=26.62,Nucleopor_Nup85|PF07575.9|8.9e-19 S_Transcript_13844:459-929(+)
ATGGTTTTTATCTATGTTTGTTGTTCGGCTATCACTTTTTATACTCTATATGTTGTGTGCATAGTATTTTTTAAAGTAATTAATAAATGTGTTCGAGTTATCAGGTGGGAGCATGTCATGGAGTATAGCCAGGAGATAAACTCTCTTCTTGGTACCACAAAGTCAGTCACTGGTTCAACAGTTGATGACCCAAGAACTATTGTGAAGGCAGATGAGGAGCCAAGCAGTTTAAAGGCTGCATGGGAGCTGATGGAAATTTTTTATGCAGACAAACAGTTTCAAGCTTGGCTTCCTGAACGTTTTGTCGATTGGTTAGATGACTATGCCCTCTTTTCAGAAACTCAGTCCACAGTGCACTCAAAACTTTTGGATTTGCAACGTGACCTTTTGCGCTTTGAGGTGATTGAGGATCATCCAAAATACTGGGATTGCTTATCATCTGCTCTAGCAGTTGGCTGGCTGGAGGTTGTG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_13844.p1 GENE.S_Transcript_13844~~S_Transcript_13844.p1 ORF type:3prime_partial len:158 (+),score=26.62,Nucleopor_Nup85|PF07575.9|8.9e-19 S_Transcript_13844:459-929(+)
MVFIYVCCSAITFYTLYVVCIVFFKVINKCVRVIRWEHVMEYSQEINSLLGTTKSVTGSTVDDPRTIVKADEEPSSLKAAWELMEIFYADKQFQAWLPERFVDWLDDYALFSETQSTVHSKLLDLQRDLLRFEVIEDHPKYWDCLSSALAVGWLEVV

Click here to download the sequence:
Link to NCBI Protein BLAST