Transcript Information: S_Transcript_138682.p2


Annotated TAIR IDAT5G16640.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:5461031-5462545 | Forward length=504
E-Value2E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.453651327972
Replicate 20.74160637168117
Replicate 30.61992390196977
Condition 2: 8 Hour
Replicate 12.060857047454
Replicate 21.1279923683896
Replicate 30.71649907915904
Condition 3: 24 Hour
Replicate 11.5603488207567
Replicate 20.76180879248226
Replicate 31.0597497649208


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_138682.p2 GENE.S_Transcript_138682~~S_Transcript_138682.p2 ORF type:complete len:238 (+),score=21.30,PPR_2|PF13041.2|4.7e-05,PPR_2|PF13041.2|3.2e-10,PPR_2|PF13041.2|9.4e-15,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|5.1e-09,PPR|PF01535.16|22,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.00035,PPR|PF01535.16|7.5e-06,PPR_3|PF13812.2|24,PPR_3|PF13812.2|0.031,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.74 S_Transcript_138682:204-917(+)
ATGATGAATATGGTGGTGCAGGTGCTCCGTAACGGTAACATTTCTCGCCTTTGCTTCGCATCTTCCTTCAATACTGACATGATTGCTAGTTCTTTTCCCTTTCATTGTCGTTGTTTTGGTAATTTGAGACTTGCAAACAAAACCCTAGTGGCAGAAAATCAAAATGGGTTCATGTTTAACAACGTTAATGATGCCGTTTCCCACCTTAATCACTTGCTTCAGGTTCGTCCCAACCCACCTATGGCTGCTATACATTCAGTTCTGTCATGTATTGTCAAAATGGGGCATTATTCCACCGTGCTTACCCTCTTTAAGATGATGGGTTTCTTGCAATTTTCCCCTGATTTATATTCCCTCAACATAGTAATCAATTGTTATTGCCACTTGGGTCGCGTTGAGTTGGGTTTCTCTGTTATGGGAAATATCATCAAGCTTGGTTTTGAGCCTGACATTGTTACCTTCAACCCTTTGATACGCGGCCTTTGTGCAAACAACAAATATGTTGATGCAGTTGAGATATTCCACAAGGTTGGTGATCAGGGTTTGCCATTGAACCTAGTTACTTATAACACCTTAATTAATGGCCTTTGTAAATTAGGCCTTTTTGTCGAAGCCTTGATGTACTCAAGGAGATGGACTGCATGCCCAATGTTGTCACATATAATATTATCATTGACAGTCTTATCAAGGGTAATCTATTATCTGAAGCTGTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_138682.p2 GENE.S_Transcript_138682~~S_Transcript_138682.p2 ORF type:complete len:238 (+),score=21.30,PPR_2|PF13041.2|4.7e-05,PPR_2|PF13041.2|3.2e-10,PPR_2|PF13041.2|9.4e-15,PPR_1|PF12854.3|0.0016,PPR_1|PF12854.3|3.7e-08,PPR_1|PF12854.3|5.1e-09,PPR|PF01535.16|22,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.00035,PPR|PF01535.16|7.5e-06,PPR_3|PF13812.2|24,PPR_3|PF13812.2|0.031,PPR_3|PF13812.2|17,PPR_3|PF13812.2|0.74 S_Transcript_138682:204-917(+)
MMNMVVQVLRNGNISRLCFASSFNTDMIASSFPFHCRCFGNLRLANKTLVAENQNGFMFNNVNDAVSHLNHLLQVRPNPPMAAIHSVLSCIVKMGHYSTVLTLFKMMGFLQFSPDLYSLNIVINCYCHLGRVELGFSVMGNIIKLGFEPDIVTFNPLIRGLCANNKYVDAVEIFHKVGDQGLPLNLVTYNTLINGLCKLGLFVEALMYSRRWTACPMLSHIILSLTVLSRVIYYLKL*

Click here to download the sequence:
Link to NCBI Protein BLAST