Transcript Information: S_Transcript_139163.p1


Annotated TAIR IDAT5G47360.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:19214445-19215878 | Reverse length=477
E-Value1E-131
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.9785092755623
Replicate 23.0754191504415
Replicate 32.9806442155314
Condition 2: 8 Hour
Replicate 13.5757725178223
Replicate 23.9320218821338
Replicate 33.1866115611487
Condition 3: 24 Hour
Replicate 14.4131077758776
Replicate 24.4411913594055
Replicate 34.2291508800498


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_139163.p1 GENE.S_Transcript_139163~~S_Transcript_139163.p1 ORF type:complete len:495 (+),score=66.25,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|5.1e-12,PPR_2|PF13041.2|4.3e-13,PPR_2|PF13041.2|2.5e-06,PPR_2|PF13041.2|4.8e-16,PPR_2|PF13041.2|0.47,PPR_2|PF13041.2|7.1e-07,PPR_2|PF13041.2|1.2,PPR_1|PF12854.3|8.6e+02,PPR_1|PF12854.3|2.3e-08,PPR_1|PF12854.3|5.3e-07,PPR_1|PF12854.3|6.4e-11,PPR_1|PF12854.3|2.9e-08,PPR_1|PF12854.3|1.4e-06,PPR_1|PF12854.3|17,PPR_1|PF12854.3|60,PPR_1|PF12854.3|61,PPR|PF01535.16|7.7,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|0.0017,PPR|PF01535.16|3.2e-07,PPR|PF01535.16|5.4e-07,PPR|PF01535.16|0.062,PPR|PF01535.16|0.2,PPR|PF01535.16|7.1e+02,PPR|PF01535.16|8.1,PPR_3|PF13812.2|7.4,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|0.0009,PPR_3|PF13812.2|1e-05,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|9.4,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|6.1e+02 S_Transcript_139163:310-1794(+)
ATGGCTGCTGTTTTCACAATCTCTCGGTTTTTAGTTATAACCCGCTCAACCTCATTTCGATTCTTCAAGAACCCTTCTTTTTCATTCACAACAAGACCCACTTCATTAAATAATGCAGAAAAGTTTTACACCCACTTGTTAAAACATCCCCAAAACCCTGAAAAAACCCTTTCTTCTTGTATAAGTGGGGCTCAATTTCAATTGGATGCCCAATGTGTTATTCATGTGTTAAATAGATGTTGCTCCTTTAATGATAAACCCCAATTCCAATTGGGTCTTCGTTTTTTCATATGGGCTGGTCTTCAATCTAACTATAAGCATAGTAAGCATATGTATAACCTTGCTTGTAAGTTGTTTGAAATCCCTCAAAATCCCTCTAGGATTATGGACCTCTTTGAGGTGTATAGACTTGAAGGTTGTGCAACTAATAATGTTAAATTGTTTAAGGTTGTTTTGAACTTGTGTAAACAAGCTATGATTCCTGATGAAGCTTTGTGGGTTTTGAGAAGTATGGAGGAATTTCGATGTAAGCCGGATTCGACCATTTTTAATGTTGTTATTAGGTTGTTTTGTGAAAAGGGTGATCTTGATATGGCAATGGAGTTGATGAGGGAAATGGAAGTAAAATATGAATTGTATCCTGATATGATTACTTATATGGCATTGCTTAAGGGTTTTTGCAATGCTGGTAGATTGGCTGATGCTTGTATGTTGATTAAGGCAATGAGAAATCACCAGTGTACTCCTAATTTAGTGGTGTATTCAGCCCTCCTTGATGGGTTGTGTAGGTTTGGGAGTTTAGATAGGGCATTGGAGTTGTTAGGGGAAATGGAGAAAGAAGGTGGTGGTGAATGTACACCCAATGTGATTACTTATACTTCAGTGATACAAAGCTTCTGTGAAAAGGGCAAGTCAATCGAGGCATTATCCATATTAGATCGTATGAAGAAATTCGAGTGCTCCCCTAATCGAGTGACTATAAGCGTGTTAATCGAGGGACTTTGTGCTCAAGGACACATTGATGAGGCCCATAAACTAGTCGATAGGCTTGTTGCAGGAGATGATGCTTCAATTAGTGATTGCTATAGTTCTCTTGTGATCTCTCTATCGAGGATCAAAAGATTTGAGGAGGCTGAGAAGCTTTTGAAGTGGATGTTAGATAGTCAAGTGAGGCCTGATGCGGTGGCTAGTAGCATTTTAATGAGGAATCTATGTATGCAGGAGAGATTTCTTGATGCATTTAATCTATGTGAAGCTATTGACAAGACCAATTGCACAGTGACAATGGATTCTGATTTATATTCCCTCCTCCTTGCTGGCCTTTGTCAAGAAAACCATAAGGGTGAAGTCACAAAATTAGCGAGTTTAATGGTTGACAAAGGGATTCAGCTTAAAACACCTCTTGTCCGTTCTGTTAATCATTACCTAAACGAATCCATAGACATGGAGACACTTTCGAACTTGTACAAGTTAAAGAGTTGTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_139163.p1 GENE.S_Transcript_139163~~S_Transcript_139163.p1 ORF type:complete len:495 (+),score=66.25,PPR_2|PF13041.2|0.11,PPR_2|PF13041.2|5.1e-12,PPR_2|PF13041.2|4.3e-13,PPR_2|PF13041.2|2.5e-06,PPR_2|PF13041.2|4.8e-16,PPR_2|PF13041.2|0.47,PPR_2|PF13041.2|7.1e-07,PPR_2|PF13041.2|1.2,PPR_1|PF12854.3|8.6e+02,PPR_1|PF12854.3|2.3e-08,PPR_1|PF12854.3|5.3e-07,PPR_1|PF12854.3|6.4e-11,PPR_1|PF12854.3|2.9e-08,PPR_1|PF12854.3|1.4e-06,PPR_1|PF12854.3|17,PPR_1|PF12854.3|60,PPR_1|PF12854.3|61,PPR|PF01535.16|7.7,PPR|PF01535.16|2.4e-05,PPR|PF01535.16|0.0017,PPR|PF01535.16|3.2e-07,PPR|PF01535.16|5.4e-07,PPR|PF01535.16|0.062,PPR|PF01535.16|0.2,PPR|PF01535.16|7.1e+02,PPR|PF01535.16|8.1,PPR_3|PF13812.2|7.4,PPR_3|PF13812.2|0.0057,PPR_3|PF13812.2|0.0009,PPR_3|PF13812.2|1e-05,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|9.4,PPR_3|PF13812.2|0.17,PPR_3|PF13812.2|6.1e+02 S_Transcript_139163:310-1794(+)
MAAVFTISRFLVITRSTSFRFFKNPSFSFTTRPTSLNNAEKFYTHLLKHPQNPEKTLSSCISGAQFQLDAQCVIHVLNRCCSFNDKPQFQLGLRFFIWAGLQSNYKHSKHMYNLACKLFEIPQNPSRIMDLFEVYRLEGCATNNVKLFKVVLNLCKQAMIPDEALWVLRSMEEFRCKPDSTIFNVVIRLFCEKGDLDMAMELMREMEVKYELYPDMITYMALLKGFCNAGRLADACMLIKAMRNHQCTPNLVVYSALLDGLCRFGSLDRALELLGEMEKEGGGECTPNVITYTSVIQSFCEKGKSIEALSILDRMKKFECSPNRVTISVLIEGLCAQGHIDEAHKLVDRLVAGDDASISDCYSSLVISLSRIKRFEEAEKLLKWMLDSQVRPDAVASSILMRNLCMQERFLDAFNLCEAIDKTNCTVTMDSDLYSLLLAGLCQENHKGEVTKLASLMVDKGIQLKTPLVRSVNHYLNESIDMETLSNLYKLKSC*

Click here to download the sequence:
Link to NCBI Protein BLAST