Transcript Information: S_Transcript_140105.p1


Annotated TAIR IDAT1G62830.1
Annotated Gene NameLSD1-like 1
Annotated Gene Symbol(s)LDL1, SWP1, ATSWP1, ATLSD1, LSD1
Annotation TypeOrtholog
Chromosome Positionchr1:23264638-23267172 | Reverse length=844
E-Value3.7E-306
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.2512104783533
Replicate 22.1951642003069
Replicate 32.2530798490041
Condition 2: 8 Hour
Replicate 12.8201082913085
Replicate 22.7049086516546
Replicate 32.5503847890091
Condition 3: 24 Hour
Replicate 12.5311451903459
Replicate 23.282541978942
Replicate 32.7000929149054


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_140105.p1 GENE.S_Transcript_140105~~S_Transcript_140105.p1 ORF type:complete len:794 (+),score=124.15,Amino_oxidase|PF01593.20|1.2e+02,Amino_oxidase|PF01593.20|1.9e-97,NAD_binding_8|PF13450.2|1.4e-11,SWIRM|PF04433.13|3.4e-09,Thi4|PF01946.13|3.1e-06,Pyr_redox_2|PF07992.10|3.9e-06,FAD_binding_2|PF00890.20|7.3e-06,FAD_binding_2|PF00890.20|5.2e+03 S_Transcript_140105:102-2483(+)
ATGGACCCAAACACCGCCACCACTACCACCACCGCAAACTCCCCTTCTCCTCCTCCTCCCTCCACCACCACCGCAACCAACCCCAACGGCAATGCAACTTCCGACGACGTCTCCACCCCTTCAAACCCCCTCTCACCACCTCCACCCGAACCCGACGACGAAACCACCACAACCACAACCGCCTCGGACCTCCCCATCCCAAAACGCCGCCGCAAACGCAAACACTACCCAGGCATGATCTCCTCAATGGTCCTCCGCCCTCACTCCTCCCGCACCTCCTCTCTCCTCCACCTCACCGATACCATCTCTCTCCCTCACCGCCGTCGCCGCCGCCGCATCTCCCCTTCCCTTGACGTCGACTCCCTCATTGCCCTCTCCGTCGGCTTCCCCCTCGACTCGCTCACCGAAGAAGAAATCGAATACGGCGTCGTCTCATCTCTGTCCTCATCCCAAGACCACTCCCTCTACATCTCCGCCCGTAACCACCTCCTCTCCAGGTGGCGCTCTGACGTCACCTCCCCCGTCACCCTCCCTTCTCTCTCCTCCTCCCCTTCCCCCTCCCCTCACCTCTCCATGGCCCACTCCTTCCTCCTCCACCACGGCTACATCAACTTCTGCCTTTCCACCCCTCCTCCCTCCTCTCTGACGTCATCCCCCAACGTCATCATCATTGGGGCAGGCCTCGCGGGTCTCACCGCGGCCCGCCAGCTCACCCACATGGGCTTCAAGGTCGTCATCCTAGAAGGCCGAGCCCGGCCCGGCGGCCGCGTTAAAACCAAAAAAATGCAAGGAAACGGCGTCGTCGGGGCCGCCGATTTAGGTGGCAGCGTTTTAACCGGCATCAACGGAAACCCTTTAGGTGTTCTAGCTAGACAATTAGGGTTTCCACTCCATAAGGTAAGAGACATCTGCCCGCTTTATTTACCCGACGGAAAGTCCGTCGACAAGGAAATCGATTCTAGGGTGGAGGCTGCTTTTAACAAGCTCCTTGATAGGGTTTGTAAGCTCAGGCAAGTTATGATGGAGGAACTGAATTGTGTTGATGTTTCGCTAGGGACGGCTCTCGAGGCGTTTAGGAAGGTTTTCAATGTGGCTGATGATGCTCAGGAGAAGATGTTGTTGAATTGGCATTTGGCGAATTTAGAGTATGCCAATGCTTCGTTGCTATCGAGTTTGTCGATGGCATATTGGGATCAGGATGATCCTTACGAGATGGGTGGAGACCATTGCTTCATTCCTGGCGGCAATGAGAGGTTTATTCGGGCATTGGCTGAGGGGTTGCCAATTTTTTATGAGAGGAGGGTGGAGAGTGTCAGGTATGGGGTTGAGGGGGTGGTGGTTTATGCTAATGGCCAGGAGTTTAGGGCTGACATGGCGCTTTGTACGGTTCCGTTGGGGGTTTTGAAGCGTGGGGAGATTGAGTTTTTGCCTCCCCTTCCGGAGAGGAAGAAGGAGGCTATTGATAGGCTTGGGTTCGGATTGTTGAACAAGGTGGCCATGCTGTTTCCGTATAATTTTTGGGGTGGGGATTTGGACACGTTTGGGCATTTGTCCGAGGACCCTAAGAGGAGGGGGGAGTTCTTCTTGTTTTATAGTTACTCATCGGTGTCTGGTGGGCCCCTCCTTGTGGCTCTTGTGGCCGGGGAGGCGGCTATTGAGTTTGAGAAGGTGTCCCCTGTGGAGATGGTTGAGAGGGTTATGGATATCTTGAGGGGGATTTTTTATCCCAAAGGGGTGGATGTTCCGGACCCTGTTCAGGCTGTTTGTACCCGGTGGGGGCAGGACCGGTTCTCGTATGGCTCGTACTCTTATGTTGCCATTGGGGCGTCGGGGGATGATTATGATATTCTGGCTGAGAGTATTGGCTGTGGGAGGGTGTTCTTCGCCGGTGAGGCAACCAACAGGCAGTATCCTGCGACTATGCATGGTGCTTACCTGAGTGGGATGAGGGAGGCCGCTAATATTCTCAAGGCCGCCAAGAGGAGGTCATTGTTCCCGAAAGCTGATGATGGTAATGCGGAGAATGCTGGTTCGAAGGAGAGTCATGATGATTTGAGTCGGTTGTTTGTCAAACCTGATCTTAAAGTTGGGAACTTGTGTGTTCTGTTTGATCCGAGATCAGATGACCCTGAAGTTCACTCGTTATTGAGAGTTCAGTTTCGCGGGGAGAAGTTGGAGACGGGTGCCCTGCATTTGTATGGCCTGCTGAAACGTAGACAGGCTGTTGAGCTGAGCAAAGTAGATGGTGATGTCAATAGGTTGAAAATGCTGAATCAAATGTTTGGAGTGCGGTTAGTTGGAAGGAAAGGATTATGTTCGGATGCAGAATCACTAGTCGCAGCTCTTTGTAGCAAAGCATGTTCTAAAGAAGCTGAATCATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_140105.p1 GENE.S_Transcript_140105~~S_Transcript_140105.p1 ORF type:complete len:794 (+),score=124.15,Amino_oxidase|PF01593.20|1.2e+02,Amino_oxidase|PF01593.20|1.9e-97,NAD_binding_8|PF13450.2|1.4e-11,SWIRM|PF04433.13|3.4e-09,Thi4|PF01946.13|3.1e-06,Pyr_redox_2|PF07992.10|3.9e-06,FAD_binding_2|PF00890.20|7.3e-06,FAD_binding_2|PF00890.20|5.2e+03 S_Transcript_140105:102-2483(+)
MDPNTATTTTTANSPSPPPPSTTTATNPNGNATSDDVSTPSNPLSPPPPEPDDETTTTTTASDLPIPKRRRKRKHYPGMISSMVLRPHSSRTSSLLHLTDTISLPHRRRRRRISPSLDVDSLIALSVGFPLDSLTEEEIEYGVVSSLSSSQDHSLYISARNHLLSRWRSDVTSPVTLPSLSSSPSPSPHLSMAHSFLLHHGYINFCLSTPPPSSLTSSPNVIIIGAGLAGLTAARQLTHMGFKVVILEGRARPGGRVKTKKMQGNGVVGAADLGGSVLTGINGNPLGVLARQLGFPLHKVRDICPLYLPDGKSVDKEIDSRVEAAFNKLLDRVCKLRQVMMEELNCVDVSLGTALEAFRKVFNVADDAQEKMLLNWHLANLEYANASLLSSLSMAYWDQDDPYEMGGDHCFIPGGNERFIRALAEGLPIFYERRVESVRYGVEGVVVYANGQEFRADMALCTVPLGVLKRGEIEFLPPLPERKKEAIDRLGFGLLNKVAMLFPYNFWGGDLDTFGHLSEDPKRRGEFFLFYSYSSVSGGPLLVALVAGEAAIEFEKVSPVEMVERVMDILRGIFYPKGVDVPDPVQAVCTRWGQDRFSYGSYSYVAIGASGDDYDILAESIGCGRVFFAGEATNRQYPATMHGAYLSGMREAANILKAAKRRSLFPKADDGNAENAGSKESHDDLSRLFVKPDLKVGNLCVLFDPRSDDPEVHSLLRVQFRGEKLETGALHLYGLLKRRQAVELSKVDGDVNRLKMLNQMFGVRLVGRKGLCSDAESLVAALCSKACSKEAES*

Click here to download the sequence:
Link to NCBI Protein BLAST