Transcript Information: S_Transcript_140543.p2


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeHomolog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value0.0004
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.6227439777549
Replicate 20.53811681847597
Replicate 30.22491141565366
Condition 2: 8 Hour
Replicate 11.0402629422992
Replicate 20.54565484487138
Replicate 30.25994936103636
Condition 3: 24 Hour
Replicate 12.3976091636018
Replicate 20.27638794605302
Replicate 30.61517181475893


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_140543.p2 GENE.S_Transcript_140543~~S_Transcript_140543.p2 ORF type:5prime_partial len:82 (+),score=17.43 S_Transcript_140543:2-247(+)
GCTCAACGTCTATCAGCTGAGAGGGAAACTGCATATACCCCTTTTGTTCCCCAGGCTGTTCTTCCTTCAAGGTCAAAGAAAGAAGGAAGAGCTTCCTTCGTTGGAGAGGGACCTTCGAATGGCTATTGTAGCAGTTGTTTGTCAGGGGGGGTGACGGTCGAGGTTGGAATGTTAATAAGATTGAAGGGGATGGGGTATGCTGCACCACATAAACAAGGGAAGGATAGGCAATTTTGGGGCTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_140543.p2 GENE.S_Transcript_140543~~S_Transcript_140543.p2 ORF type:5prime_partial len:82 (+),score=17.43 S_Transcript_140543:2-247(+)
AQRLSAERETAYTPFVPQAVLPSRSKKEGRASFVGEGPSNGYCSSCLSGGVTVEVGMLIRLKGMGYAAPHKQGKDRQFWGS*

Click here to download the sequence:
Link to NCBI Protein BLAST