Transcript Information: S_Transcript_140702.p1


Annotated TAIR IDAT5G58610.1
Annotated Gene NamePHD finger transcription factor, putative
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:23686771-23691053 | Reverse length=1065
E-Value1E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.1570870102252
Replicate 21.7746156818001
Replicate 31.38320520627
Condition 2: 8 Hour
Replicate 12.6888535617255
Replicate 22.188550410408
Replicate 32.896174946329
Condition 3: 24 Hour
Replicate 11.2584552445668
Replicate 21.2070943122185
Replicate 31.1240258919671


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_140702.p1 GENE.S_Transcript_140702~~S_Transcript_140702.p1 ORF type:3prime_partial len:920 (+),score=165.28,Jas|PF16135.1|1.2e-18,Agenet|PF05641.8|9.6e-14,Agenet|PF05641.8|70,PHD|PF00628.25|4.3e+02,PHD|PF00628.25|1.6e+04,PHD|PF00628.25|2.4e-07 S_Transcript_140702:247-3003(+)
ATGGCGGATTCTTCCGGGTACCCCAGAAAACGTAAACGGAATTCAGTCACTCCTGCCAAACGAAAGCTTCTTAGAGGAGATATAGTTGAGGTTAAGAGTATAGAAGATGGATTCCAAGGATCATGGCATATCGCAGAAATCATTGAGTGTAGGAGTGGCGTTCGAAAAGTTAGGTATAAGGAACTTCTTTGTGATGATGAGTCTGAGTATTTAACTGAATTTATAGAAGTTACTAGCAATGTAGATGGAGTGATTAGTAGCTCAGTGACATCAAATGATTTTCGGGGCAGGATAAGGCCATGTCCCCCAGTTAGGGAGCTGGTGAGAGAGGAAATCTCTTATGGTCTTTGTGTGGACGCTATGATCAACGATGCTTGGTGGGAAGGAGTTGTTTTCGACAGGAGAGATGGTTCAGATAATAGGAACATATTCTTTCCTGATTTGGGCGATGAGCATAATGTAGAAATCCAAGACTTGCGGATAACTCAAGACTGGGATGAATCTAGTACAGATTGGAAGCCTCGTGGGAATTGGCTGTTCTTAGAGGTCATTGAGGAGTATGAGAGGGATGGGTACATTCCTGTATCTCTTAAGCAAATTTGGTATGATGTGAGGGAAAAAAAGGAATTTTTTAAGGTTGGAGTCTGGGCTTCTTCTGTGAAGTCTCTGTGGGAAAAGCTGATAATGGAGGTCATTGATGTTCATAAGGGGATAACTGTAGATGAGATCTTGGCTTCATGTAAATCTTCAGAAGCCCTGTTGGATAATGGTGAACCCATTTGTGCAGACCAGTTTGCTCTGACCTGTGAACCATATTCAGCCTATTCGTTGGCTGTTGTAGCTCCTATGGATATAGCCCTTCGAGATGCCAAGTTGACAACACAGCATGAAGGCACTATGACAGTGGCTGCTAAAAATGCTGAAATGGCTTTGGATTCACAGGGTATCGCTCCAAGCTCCGGGGAGGCTGTGCCCTCAAGTGATCAGTTGATTCCTGTACAGCCTAGCGCTTTGTCTGTTATTTGTTATGAAGCTCCTTGTTCTGGGGCCAGTAAAAAGCGAGTTGGGAAGCACAAATTGCATAAAAATTCTGGCTCTTATAAGACATCCCAGCGTTCTAAAAAAAGTAAGTTTAACTGGCAGCCTGTTTTGAAGCTCAAGAAGGTGTACAGCCCACACTCTATTTCTGAATATATTCAGAAAGATTATCCTAGCTATCTTACCAAAACTGTTAGGAATCATGTCTTTTGTTTGGGATATAAAGTGGAATCTGCCAAGCAGAGTAATCAATCCCGGGTTCGTTATACCTCTCCTGAAGGGAAAACTTTTTATGATCTTCGTACCTTGTGCAAGTATCTAGAAGAAAATTCTTCCCCTGAAGAGAGTTCTTCTCCTACCACTGAAGATGCTCAGAAAATGCTCTCTCTGTCTCCTGATAATATGAACTCTGTTCCATTGGTTAATGAACAACTTACAAGTTGTGGGCAGCCTGGAAGTGTAGAGAGCACAAGAACACTTTTAGCTTGCAAATCTCATGATCCATGTGTTGTAGCTGAATATTGCCCGCAAGCTGTATTAGAATATGTGGATGCATTTAGAAAACGCTCGGGCTCAAGAGAGCATCTTTCTAAATTGCAAGACAAAGCTAGGAATCACTTGGCTGCCATTGGCTGGGATTTCGCAGTTCTGAAAAAGAGACAAAGCAATGAGTGGCGCTATTACTCGCCTAGCGGAAAGACTTATAATTCTCTGAAGTTAGTATGTAATGCTATTGCAGAAGGGAATGAGTTAAATGCAAGGGATGATTCTGGCCCAGTTCCAAATGAAGATGTGATGTGCAGTGAGGAATCCAAGGTCCCCTTTGATGGTGAGCTTTCATTGTGTAATGCGGTCACTCAATGCGATTCTGTTTCTCAAAAGCCCAGAACAATCAGAATTAACTGGAAACCTGGAACCTCTGGGGTCAGAAAGGACCAAAAGAAGAAGATTGGCTCAGTATCCTCTTCGTCTTCTCTACTTCATAGTGATGGACAGGACCAGCTATTGGAGGATCATGAGTTTACGCATGGATTGAAGAATGGGGGGCGGCAGTGCTCCAGAAGATTGAGCACCAGCTTCTTATCAAAGAAAAGAAAAGCCTTGAGTAGAGTAAGGCGCACCTCAGATGGTAACAAGTTGACTCGAGTGCTGCGGTCGAGTAAAAGAGTAAGGCAGGCAGGGCCTGTCACTTCGTCTCAAGCTCCTCGGACAGTACTTTCATGGTTGATTGACAATGATGTGTCTTTGGCTAGGACAAAAATAATTTACCGTAGAGAAAGGGATGCGAAGGTAGTAGCTGAAGGACGAATAACTCGTGATGGAGTAAAGTGCAATTGCTGTGGAGAGGTGTTCTCTCTTAGCAGCTTTGGAGCTCATGCCGATAACAATTACCACCGACCAGCAGCAAATCTATTTTCTGAAGATGGGAGATCTCTGTTGGAATGCCAAATGCAAATGATGGATCAGACTTCCAGACACTCCTCCAGAGAACTGGTTGATAGGGCTATGGGAGATCATGAAAGCTGGAATGATCATGTTTGTTCGATTTGTCATTATGGTGGAAAATTAATTTTATGTGATAAGTGTCCGTCCTCATTTCATGCAAACTGCCTCAATCTGCAGAAAATTCCTGAAGGTGATTGGTTCTGTCCGTCATGCTGTTGCACAATTTGTGGTGAAAGCCAATATGATGTCAGTATGGAATTTACTGGGAAAAGC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_140702.p1 GENE.S_Transcript_140702~~S_Transcript_140702.p1 ORF type:3prime_partial len:920 (+),score=165.28,Jas|PF16135.1|1.2e-18,Agenet|PF05641.8|9.6e-14,Agenet|PF05641.8|70,PHD|PF00628.25|4.3e+02,PHD|PF00628.25|1.6e+04,PHD|PF00628.25|2.4e-07 S_Transcript_140702:247-3003(+)
MADSSGYPRKRKRNSVTPAKRKLLRGDIVEVKSIEDGFQGSWHIAEIIECRSGVRKVRYKELLCDDESEYLTEFIEVTSNVDGVISSSVTSNDFRGRIRPCPPVRELVREEISYGLCVDAMINDAWWEGVVFDRRDGSDNRNIFFPDLGDEHNVEIQDLRITQDWDESSTDWKPRGNWLFLEVIEEYERDGYIPVSLKQIWYDVREKKEFFKVGVWASSVKSLWEKLIMEVIDVHKGITVDEILASCKSSEALLDNGEPICADQFALTCEPYSAYSLAVVAPMDIALRDAKLTTQHEGTMTVAAKNAEMALDSQGIAPSSGEAVPSSDQLIPVQPSALSVICYEAPCSGASKKRVGKHKLHKNSGSYKTSQRSKKSKFNWQPVLKLKKVYSPHSISEYIQKDYPSYLTKTVRNHVFCLGYKVESAKQSNQSRVRYTSPEGKTFYDLRTLCKYLEENSSPEESSSPTTEDAQKMLSLSPDNMNSVPLVNEQLTSCGQPGSVESTRTLLACKSHDPCVVAEYCPQAVLEYVDAFRKRSGSREHLSKLQDKARNHLAAIGWDFAVLKKRQSNEWRYYSPSGKTYNSLKLVCNAIAEGNELNARDDSGPVPNEDVMCSEESKVPFDGELSLCNAVTQCDSVSQKPRTIRINWKPGTSGVRKDQKKKIGSVSSSSSLLHSDGQDQLLEDHEFTHGLKNGGRQCSRRLSTSFLSKKRKALSRVRRTSDGNKLTRVLRSSKRVRQAGPVTSSQAPRTVLSWLIDNDVSLARTKIIYRRERDAKVVAEGRITRDGVKCNCCGEVFSLSSFGAHADNNYHRPAANLFSEDGRSLLECQMQMMDQTSRHSSRELVDRAMGDHESWNDHVCSICHYGGKLILCDKCPSSFHANCLNLQKIPEGDWFCPSCCCTICGESQYDVSMEFTGKS

Click here to download the sequence:
Link to NCBI Protein BLAST