Transcript Information: S_Transcript_140920.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeOrtholog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value8.7E-37
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.7049279943954
Replicate 23.8338617919616
Replicate 33.2048033194453
Condition 2: 8 Hour
Replicate 14.1951587509114
Replicate 24.6210703747632
Replicate 33.9137293963244
Condition 3: 24 Hour
Replicate 17.735237432735
Replicate 25.6473759993521
Replicate 35.0444088810232


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_140920.p1 GENE.S_Transcript_140920~~S_Transcript_140920.p1 ORF type:internal len:305 (-),score=42.72,gag_pre-integrs|PF13976.2|4.5e-17 S_Transcript_140920:1-912(-)
TCTAATAAATCAGATAAGAAAAACCGTGGTGGTAGATCAAAGTCTAGGGGTAAGAACAATGCCCATAAAAATTGCAAGTATTGTAAGAAACCTGGACACATAGTTGATGAGTGTTTTAAACTCAAAAACAAACTTGAAAGAGAAGAAAAGGCCAAGGGCAAGAAACCTATTGATTCATCCGCCGAGGCGGGTGTAGTTGATTGTCACTCCGATGGTGAATTGTATGTAGCCGTTGATTCTAATGATAAGGCTAAATCTCAATGGATTCTTGACTCGGGTTGTACTTTTCATATGTGTCCACACCGTGACTGGTTTGACTCCTATGAGAGTGTTGAAGGTGGCACCGTATATATGGGTAACAATGCTTCTTGTAAGGTTGTTGGGAGAGGAAACGTTAAAATAAAAATTCATGATGGAACCACCCGTACTCTTTCGGGTGTCAGACATGTTCCCGACCTTCGTAGAAACCTTATTTCACTTGGTACCCTTGAATCTTTGGGTTGTCACTACTCCGCTCAAGGTGGAGTTCTTAAGGTGTCTAAGGGTTCTCTTGTGTTGATGAAAGGCTCTAGAGTTGGGTCTTTGTATGTCTTGCAAGGTTCTACCATCACCGGTTCTGCCGCCATTGCTTCCACATCCAATACCAATGAACCCAAACTTTGGCATATGCGTTTGGGACATATGGGTGAGAAAGGTATGGATATTCTTTGCAAGCGTGGTTTACTTGGTTCTATTACTAATTGTGATATTGACTTTTGCGAGCATTGTATCTATGGCAAGCAAAAGAGAGTAAGCTTCTCACCGGGTACACATAGAACCAAGGCAACTCTTGATTATGTCCACTCCGACTTGTGGGGTCCTTCACAAGTTGTCACCGCCGCAGGTAATCACTATATGATGACTATTATTGAT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_140920.p1 GENE.S_Transcript_140920~~S_Transcript_140920.p1 ORF type:internal len:305 (-),score=42.72,gag_pre-integrs|PF13976.2|4.5e-17 S_Transcript_140920:1-912(-)
SNKSDKKNRGGRSKSRGKNNAHKNCKYCKKPGHIVDECFKLKNKLEREEKAKGKKPIDSSAEAGVVDCHSDGELYVAVDSNDKAKSQWILDSGCTFHMCPHRDWFDSYESVEGGTVYMGNNASCKVVGRGNVKIKIHDGTTRTLSGVRHVPDLRRNLISLGTLESLGCHYSAQGGVLKVSKGSLVLMKGSRVGSLYVLQGSTITGSAAIASTSNTNEPKLWHMRLGHMGEKGMDILCKRGLLGSITNCDIDFCEHCIYGKQKRVSFSPGTHRTKATLDYVHSDLWGPSQVVTAAGNHYMMTIID

Click here to download the sequence:
Link to NCBI Protein BLAST