Transcript Information: S_Transcript_143121.p1


Annotated TAIR IDAT1G78790.1
Annotated Gene Nameunknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2008 (InterPro:IPR018552); Has 69 Blast hits to 69 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 33; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:29623930-29624785 | Reverse length=104
E-Value7E-22
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.7184961331793
Replicate 25.4701131134334
Replicate 35.4870950331374
Condition 2: 8 Hour
Replicate 110.045845025426
Replicate 27.7654350650291
Replicate 37.7512173109023
Condition 3: 24 Hour
Replicate 13.2496520895099
Replicate 27.3048648882442
Replicate 37.504079327142


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_143121.p1 GENE.S_Transcript_143121~~S_Transcript_143121.p1 ORF type:5prime_partial len:121 (+),score=25.16,CENP-X|PF09415.6|1.3e+04,CENP-X|PF09415.6|5.2e-15 S_Transcript_143121:3-365(+)
TTCAGATTTCTTAATTTCTTCTTTTTCTTTCTCATTGCTTTGTCATTTGTTGAAATTGTGATTATCTCCAATCAGAATCTTGTTCACGCCATTTTCAAGCTCATTTGGCGTCGAAAAGCTCTAGAGAGAGAAAGGAACGAAATTTCCGAAACCCTAGACCCTGAGGGAGGACCAGGGACATCTAAGAAAAATCGACCGACATCAGCCAATGCAAATGCTGTAAAAATGAGTTGTGAACTGCTTCTAGTTTTCATCACAGAGGCCATTCAAAGGGCTGCTGCAGTGGCTGAAGCTGAGGGTGTTAGTCAGATAGAAGGTACTCATCTGGAACGAATTCTTCCACAGTTACTCCTTGACTTTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_143121.p1 GENE.S_Transcript_143121~~S_Transcript_143121.p1 ORF type:5prime_partial len:121 (+),score=25.16,CENP-X|PF09415.6|1.3e+04,CENP-X|PF09415.6|5.2e-15 S_Transcript_143121:3-365(+)
FRFLNFFFFFLIALSFVEIVIISNQNLVHAIFKLIWRRKALERERNEISETLDPEGGPGTSKKNRPTSANANAVKMSCELLLVFITEAIQRAAAVAEAEGVSQIEGTHLERILPQLLLDF*

Click here to download the sequence:
Link to NCBI Protein BLAST