Transcript Information: S_Transcript_143883.p1


Annotated TAIR IDAT3G01680.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Mediator complex subunit Med28 (InterPro:IPR021640); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01670.1); Has 122 Blast hits to 112 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 122; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:252033-255246 | Forward length=740
E-Value1.6E-201
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.0866564374608
Replicate 22.7461463664233
Replicate 32.2694738886468
Condition 2: 8 Hour
Replicate 12.8353418526315
Replicate 22.5314680214684
Replicate 33.3164685099688
Condition 3: 24 Hour
Replicate 12.8117176770072
Replicate 23.0774058151759
Replicate 33.1393775214289


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_143883.p1 GENE.S_Transcript_143883~~S_Transcript_143883.p1 ORF type:complete len:707 (+),score=119.60,SEO_N|PF14576.2|2.4e-131,SEO_C|PF14577.2|7.2e-107 S_Transcript_143883:54-2174(+)
ATGGCAAGTGCAGCAATACCTGCCAGGAAACACAGATTCAGGGGTGATCGTCATTTGTTCTCAACCTCTGATGACAGCGCAATGCTGAACCAACTTCGAGCCACACATGCTCCAGATGGTCGTGACATTGATGTGAAACCTCTTCTAAACATCATTGAGGACATTTTTCACCGTGCAACACCAATCATCCCTGGCTCTATTCAGGGAATGCAAGCACCCATGGATGCTCTGGATGACAAGACATTTCAAGCAGGCTATGGAGACATGATTGAACTATTGGCATACACTATAAATAAAATCTCCTGTGAGATATCTTGCAAGTGTTCTGGTGGTGGAGATGCACATGCAACAACAATGGCAATATTTAACATAGTCACAAACTATGCATGGGACGCGAAAGTAGTTCTCACTCTTGCAGCATTTGCAGTGTATTATGGTGAGTTTTGGTTGGTTGCACAACTTTACACAACAAACTCACTGGCCAAATCAGTTGCAATTCTCAAGCAAGTACCTGACATAATGGAGCGGTCCGATGCCCTAAAACCCAAGTATGAAGCCATCGCCAATCTGATCAGAGCAATGATCAACGTTACCAAGTGTATTGTGGAATTCAACGACCTCCCACCTCACTACATAACCCCAGATACACCAGCATATGAAAGTGCCAATGCTCTGATCCCCACAGCTGCTTACTGGATCATCCGGAGTATAGTAGCCTGTGCATCACAAATTGTGGGCCTCGTAAGCATGAGCTATGAGTTTATTTCTTCAACAACTGAGGCTTGGGAGCTATCAAGCTTGGCTCACAAGGTCAACAACATATACGAGCACCTAAGGAAGCAACTGGATCTTTGTTACCAACACATTGATGAGAAGAAACACATAGAAGCATATCAAATGCTCATTCGCTTATTTGAGGCACCCCATCTTGACAACATGAAAATTCTTCGAGTTCTTATTTATGCAAAGGATGATCAGCTGCCCTTATTTGATGGTTCTGCCAAAAAAAGGGTCAGCATTGACGTATTGAGGAGAAAAAATGCCTTACTACTAATTTCAGACCTGGACCTTTCCCATGAAGAGCTATCAATTCTTGATCAAATGTACCAAGAATCAAGGCAACATCCAACAAGGATGGAAAGTCAATATGAAGTTGTGTGGCTTCCAGTCGTCGACCGATCCACTGCCTGGACAGAACAAAGACAACAGCAGTTTGAGGCTCTGCAGTCCTTGATGCCTTGGTACACAATTTACCACCCCTCGTTGCTTGATCCAGCCGTTATTAGGTACATAAAAGACGTGTGGCACTTCAACAAGAAGCCCTTACTTGTTGTCCTGGACCCACAAGGTAAAGTAGCAAACCCCAATGCTCTTCACATGATGTGGATTTGGGGGAGTATGGCTTTCCCTTTTACCAGTGCAAGAGAAGAAGCACTTTGGAGGGAAGAGACCTGGAGGATGGAGTTGCTAGCAGATGCTATTGAGCCAATGCTCTTCCAATGGATGCAAGAGAGAAAATACATTTGCTTGTATGGAGGAGAAGACATGGATTGGATACTAAAATTTACCACTACGGCACAGATGGTTGCACAGCAAGCTGGCATCCCACTGGAAATGTTATATGTTGGCAAAAGTAACCTCAAGGAAAAGGTTCGTAAGAACAATGCTGCTATTATTGCTCAAGGCCTGAGCCATGTTCTGCCTGACATAACTCTAGTATGGTACTTCTGGGTGCGGCTGGAGAGCATGTGGCACTCCAAGATTCAGCACGGGAGGTCAGTCGAGAACGACCCCATAATGCAGGAAATAGTCACGATGATGAGCTACGATGCAAGTGATCAGGGTTGGGCTGTGATCAGTAGGGGGTCAGCAGAGATGGCTAAGGCCAAAGGGGACATCCTCTTGACATGCTTGACTGAGTTTGATAATTGGAAGCAAGATGTCGAGCTGAAAGGGTTTGTGCAAGCACTCATCGACTATCTGCAGAAGCTACACACACCACATCACTGCAACCGCCTGATACTGCCAGGAACAACAGGAAGCATCCCTGAGAAGGTTGTTTGTGCAGAATGTGGCCGTTCCATGGAGAAGTTCATCATGTATCGATGCTGCACCGATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_143883.p1 GENE.S_Transcript_143883~~S_Transcript_143883.p1 ORF type:complete len:707 (+),score=119.60,SEO_N|PF14576.2|2.4e-131,SEO_C|PF14577.2|7.2e-107 S_Transcript_143883:54-2174(+)
MASAAIPARKHRFRGDRHLFSTSDDSAMLNQLRATHAPDGRDIDVKPLLNIIEDIFHRATPIIPGSIQGMQAPMDALDDKTFQAGYGDMIELLAYTINKISCEISCKCSGGGDAHATTMAIFNIVTNYAWDAKVVLTLAAFAVYYGEFWLVAQLYTTNSLAKSVAILKQVPDIMERSDALKPKYEAIANLIRAMINVTKCIVEFNDLPPHYITPDTPAYESANALIPTAAYWIIRSIVACASQIVGLVSMSYEFISSTTEAWELSSLAHKVNNIYEHLRKQLDLCYQHIDEKKHIEAYQMLIRLFEAPHLDNMKILRVLIYAKDDQLPLFDGSAKKRVSIDVLRRKNALLLISDLDLSHEELSILDQMYQESRQHPTRMESQYEVVWLPVVDRSTAWTEQRQQQFEALQSLMPWYTIYHPSLLDPAVIRYIKDVWHFNKKPLLVVLDPQGKVANPNALHMMWIWGSMAFPFTSAREEALWREETWRMELLADAIEPMLFQWMQERKYICLYGGEDMDWILKFTTTAQMVAQQAGIPLEMLYVGKSNLKEKVRKNNAAIIAQGLSHVLPDITLVWYFWVRLESMWHSKIQHGRSVENDPIMQEIVTMMSYDASDQGWAVISRGSAEMAKAKGDILLTCLTEFDNWKQDVELKGFVQALIDYLQKLHTPHHCNRLILPGTTGSIPEKVVCAECGRSMEKFIMYRCCTD*

Click here to download the sequence:
Link to NCBI Protein BLAST