Transcript Information: S_Transcript_144378.p1


Annotated TAIR IDAT1G20300.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:7029701-7031314 | Forward length=537
E-Value6.8E-234
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.617782290816
Replicate 23.4100773431541
Replicate 32.9535852945803
Condition 2: 8 Hour
Replicate 14.0109207114161
Replicate 24.2494014176017
Replicate 33.9694315837954
Condition 3: 24 Hour
Replicate 12.9289229261132
Replicate 22.8277008856895
Replicate 31.7378317374102


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_144378.p1 GENE.S_Transcript_144378~~S_Transcript_144378.p1 ORF type:complete len:537 (+),score=64.21,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|8.6e-10,PPR_2|PF13041.2|1.4e-17,PPR_2|PF13041.2|6.3e-10,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|3.6e-13,PPR_2|PF13041.2|4.7e-08,PPR_2|PF13041.2|1.8,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|1e-10,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|1.6e-09,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|1.1e+03,PPR|PF01535.16|7.5,PPR|PF01535.16|0.00055,PPR|PF01535.16|0.088,PPR|PF01535.16|3e-07,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|8.6e-06,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.5,PPR|PF01535.16|0.015,PPR|PF01535.16|0.00016,PPR|PF01535.16|5,PPR_3|PF13812.2|0.67,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|3.3e+03,PPR_3|PF13812.2|2.8e-05,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|3.3e-06,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.0059,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|55,TPR_7|PF13176.2|26,TPR_7|PF13176.2|16,TPR_7|PF13176.2|0.16,TPR_7|PF13176.2|42,RPN7|PF10602.5|2.7,RPN7|PF10602.5|7.6e+02,RPN7|PF10602.5|22,RPN7|PF10602.5|1.4e+02,RPN7|PF10602.5|0.37 S_Transcript_144378:230-1840(+)
ATGGCATTACTCAGAACAACTTCAAAACAACTAGTTCGTTTCTCTCTCCCTAAAACCTCCCTTAAACCCTTCTGTTCCTCTTCATCCCCTGCAATTCAACCTCACCAACACGACAATGATGAAGAAGAAGAAGACCAACCCTCAATTATTTCCAATCTCTCCCCTCATGAATCAGAACTTGTCCGAAAATTCCACTCTATAATCAAAGTCCACCACCAAAAAAACCCGAACCCTAACAACCCAATTGAACCCATAGACCCTAACTTCACTATCCCATCCCTCACAAACACCTTCTCAACCATCTCCCCTCCAAATTCTCTCTCCTCCCATGTCATCACCTCCGTCCTCCACCGCTGCCGTAGTCTCCGCCACGGCATCCCTTTCCACCAAGCCCTCTCCTTCTTCAACTGGGCCTCCCCTTCTTGGGCCGCCAGACCCAACAACCCACCTCACCACTTTGTGGAATTAATTGAGCTTTTCGGCAAGCTACGGCACTTCGACCTAGCATGGAACTTAATAGACTCAATGAAATCCCAAGACCTAGAAATCCCTCTAGACATTTTCGTTACCTTGATTCGACGATACGTTAGGGCGGGTATGATACACGAGGCTATTCATACATTCAACAGAATGGAGGATTATAATTGTAAGCCTGACAAGGAATCGTTCTCAGCCGTCATTTCTATGCTTTGTAGGAAAAGGAAGGCAGGCGAGGCACAGTCGTTTTTCGACTCTTTTAAACACAGGTTCGACCTTGATGTCATGGTCTACACCAGCCTCGTTAATGGCTGGTGTAGGGCGGGCAACATTTCGGAGGCTGAGAGGGTGTTTCGTGAGATGATGATGGCCGGCATTGAGCCCAATGTGTACACCTACACTGTCGTGATCGATGCCTTGTGTAGGCATGGGCAGATTACTAGAGCTCATGATGTTTTCTCAGAAATGATCGACAAGGGGTGTGCCCCGAATGCTGCGACTTTTAATAATTTGATGAGGGTTCATGTTAAGGCTGGTAGGACTGAGAAGGTTTTGCAAGTGTTTAATCAAATGAAAAGGCTCAGGGTGAGCCCTGATACAATTACTTACAACTTTTTGATTGAGACTCATTGTAGGGATGGGAATAGAGACGAGGCTATTAAGTTGATTCATCAGATGATTAGCAAAGGATGTGAGGTGAATGCGCATAGTTTTAACCCGGTTTTTAGCTGTATAGCCAAGGATAGGGATGTTAATGCCGCTCATAAGCTGTTTGCGAAGATGAAGGACTTGAAGTGCCAGCCTAATACCGTGACTTACAACACGTTGATGAGGATGTTTGTAGGGTCGAAATCTAATGACATGGTTTTAAAGCTCAAGAAGGAGATGGATGAACTTGGGATTGAGCCTAATGTGAATACTTACAAGATTTTGATCTCTATGTACTGTGCCATGGGGCATTGGTCTAATGCTTATAAGTATATAAGGGAAATGATCGAGGAGAAGTGCTTGAGGCCGAGCTCACCTGTTTATCAGATGGTTTTGCAGCAGTTGAGGAAGGCAGGACAGATGAAGAAGCATGAGGAGTTGGTGGAAAAGATGGTTGAGAGGGGATTTGCTGCTCGTCCCATCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_144378.p1 GENE.S_Transcript_144378~~S_Transcript_144378.p1 ORF type:complete len:537 (+),score=64.21,PPR_2|PF13041.2|2.2,PPR_2|PF13041.2|8.6e-10,PPR_2|PF13041.2|1.4e-17,PPR_2|PF13041.2|6.3e-10,PPR_2|PF13041.2|1.9e-13,PPR_2|PF13041.2|4.7e-12,PPR_2|PF13041.2|1.4e-10,PPR_2|PF13041.2|3.6e-13,PPR_2|PF13041.2|4.7e-08,PPR_2|PF13041.2|1.8,PPR_1|PF12854.3|0.66,PPR_1|PF12854.3|0.0047,PPR_1|PF12854.3|1e-10,PPR_1|PF12854.3|5.7e-11,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|1.6e-09,PPR_1|PF12854.3|2.8,PPR_1|PF12854.3|0.0093,PPR_1|PF12854.3|1.6e-06,PPR_1|PF12854.3|1.1e+03,PPR|PF01535.16|7.5,PPR|PF01535.16|0.00055,PPR|PF01535.16|0.088,PPR|PF01535.16|3e-07,PPR|PF01535.16|2.3e-08,PPR|PF01535.16|8.6e-06,PPR|PF01535.16|7.2e-06,PPR|PF01535.16|1.5,PPR|PF01535.16|0.015,PPR|PF01535.16|0.00016,PPR|PF01535.16|5,PPR_3|PF13812.2|0.67,PPR_3|PF13812.2|0.0013,PPR_3|PF13812.2|3.3e+03,PPR_3|PF13812.2|2.8e-05,PPR_3|PF13812.2|1.5e-06,PPR_3|PF13812.2|3.3e-06,PPR_3|PF13812.2|0.00055,PPR_3|PF13812.2|0.0028,PPR_3|PF13812.2|0.0059,PPR_3|PF13812.2|0.15,PPR_3|PF13812.2|55,TPR_7|PF13176.2|26,TPR_7|PF13176.2|16,TPR_7|PF13176.2|0.16,TPR_7|PF13176.2|42,RPN7|PF10602.5|2.7,RPN7|PF10602.5|7.6e+02,RPN7|PF10602.5|22,RPN7|PF10602.5|1.4e+02,RPN7|PF10602.5|0.37 S_Transcript_144378:230-1840(+)
MALLRTTSKQLVRFSLPKTSLKPFCSSSSPAIQPHQHDNDEEEEDQPSIISNLSPHESELVRKFHSIIKVHHQKNPNPNNPIEPIDPNFTIPSLTNTFSTISPPNSLSSHVITSVLHRCRSLRHGIPFHQALSFFNWASPSWAARPNNPPHHFVELIELFGKLRHFDLAWNLIDSMKSQDLEIPLDIFVTLIRRYVRAGMIHEAIHTFNRMEDYNCKPDKESFSAVISMLCRKRKAGEAQSFFDSFKHRFDLDVMVYTSLVNGWCRAGNISEAERVFREMMMAGIEPNVYTYTVVIDALCRHGQITRAHDVFSEMIDKGCAPNAATFNNLMRVHVKAGRTEKVLQVFNQMKRLRVSPDTITYNFLIETHCRDGNRDEAIKLIHQMISKGCEVNAHSFNPVFSCIAKDRDVNAAHKLFAKMKDLKCQPNTVTYNTLMRMFVGSKSNDMVLKLKKEMDELGIEPNVNTYKILISMYCAMGHWSNAYKYIREMIEEKCLRPSSPVYQMVLQQLRKAGQMKKHEELVEKMVERGFAARPI*

Click here to download the sequence:
Link to NCBI Protein BLAST