Transcript Information: S_Transcript_146230.p3


Annotated TAIR IDAT5G59600.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:24011315-24012919 | Reverse length=534
E-Value8E-71
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67948088260035
Replicate 20
Replicate 30
Condition 2: 8 Hour
Replicate 10.45373170887517
Replicate 20.38079742365492
Replicate 30.99776307938211
Condition 3: 24 Hour
Replicate 10.092956951023805
Replicate 20
Replicate 30.32198354559723


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_146230.p3 GENE.S_Transcript_146230~~S_Transcript_146230.p3 ORF type:complete len:235 (+),score=43.71,PPR|PF01535.16|4.4e+03,PPR|PF01535.16|0.00071,PPR|PF01535.16|7.8e-09,PPR|PF01535.16|0.06,PPR|PF01535.16|0.0059,PPR|PF01535.16|6.6,PPR_2|PF13041.2|29,PPR_2|PF13041.2|0.073,PPR_2|PF13041.2|1.6e-07,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.2,PPR_2|PF13041.2|2.8e+02,PPR_1|PF12854.3|3,PPR_1|PF12854.3|3e-05,PPR_1|PF12854.3|0.0058,PPR_1|PF12854.3|1.6e+03,PPR_3|PF13812.2|3.3e+03,PPR_3|PF13812.2|30,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|23,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|47 S_Transcript_146230:989-1693(+)
ATGTTGGATTCTAGGCTTTGCCCTAATGGGAATACAATTAGCTGTCTCTTGTCTGCTTGTGCTAATGTGGCCAATGTAACGCATGGGAAGGAGATACATAAGTATGCATTGGTGAATGAACTTGAGCAGGATATATATGTGAGGAGTGCTCTTATTGACATGTATGCTAAGTGTGGCTGTATATACCAAGCATCAATGTTGTTTGAGAAGATGACTAGACGGAATACTCCTACTTGGAACTCAATGATCTTTGGATATGCTAATCATGGTTTTTGTAATGAGGCAATTGAACTTTTCAAGAGGATGGAAGTTGAGGGGAGAGAGAAACTTGATCACCTGACTTTCACTGCAGCTCTAATGGCCTGTAGTCATGGTGGCATGATGGAACTTGGGAAAATCTTGTTCAAATCAATGCAAGAAAAGTACAACATTAGGCCAAGACTCGAGCATTATGCATGCCTGGTGGATCTTCTTGGTCGAGCAGGAAAGTTAATGGAGGCCTATGATTTAATCAAAGAAATGCCAATAAAACCTGATTTATTTGTATGGGGGGCATTACTAGGAGCTTGTAGACAGCATGGTAACATAGAGCTCGCTGAAGTAGCAGCTAGGGAATTGTCTACGCTTGAGCCTCACGGTGAGGTACAAGTCTACTGTCAAATTTATATGCTGGAACAGGAAGTTGAAATAATGCTGCACGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_146230.p3 GENE.S_Transcript_146230~~S_Transcript_146230.p3 ORF type:complete len:235 (+),score=43.71,PPR|PF01535.16|4.4e+03,PPR|PF01535.16|0.00071,PPR|PF01535.16|7.8e-09,PPR|PF01535.16|0.06,PPR|PF01535.16|0.0059,PPR|PF01535.16|6.6,PPR_2|PF13041.2|29,PPR_2|PF13041.2|0.073,PPR_2|PF13041.2|1.6e-07,PPR_2|PF13041.2|12,PPR_2|PF13041.2|0.2,PPR_2|PF13041.2|2.8e+02,PPR_1|PF12854.3|3,PPR_1|PF12854.3|3e-05,PPR_1|PF12854.3|0.0058,PPR_1|PF12854.3|1.6e+03,PPR_3|PF13812.2|3.3e+03,PPR_3|PF13812.2|30,PPR_3|PF13812.2|0.12,PPR_3|PF13812.2|23,PPR_3|PF13812.2|5.1,PPR_3|PF13812.2|47 S_Transcript_146230:989-1693(+)
MLDSRLCPNGNTISCLLSACANVANVTHGKEIHKYALVNELEQDIYVRSALIDMYAKCGCIYQASMLFEKMTRRNTPTWNSMIFGYANHGFCNEAIELFKRMEVEGREKLDHLTFTAALMACSHGGMMELGKILFKSMQEKYNIRPRLEHYACLVDLLGRAGKLMEAYDLIKEMPIKPDLFVWGALLGACRQHGNIELAEVAARELSTLEPHGEVQVYCQIYMLEQEVEIMLHG*

Click here to download the sequence:
Link to NCBI Protein BLAST