Transcript Information: S_Transcript_146975.p1


Annotated TAIR IDAT4G19490.1
Annotated Gene NameVPS54
Annotated Gene Symbol(s)ATVPS54, VPS54
Annotation TypeOrtholog
Chromosome Positionchr4:10616017-10622934 | Forward length=1034
E-Value3E-96
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.274246117051
Replicate 214.140242398225
Replicate 312.239270310026
Condition 2: 8 Hour
Replicate 113.764570113786
Replicate 213.219728741657
Replicate 313.564630294079
Condition 3: 24 Hour
Replicate 113.007635169399
Replicate 213.701304271156
Replicate 312.954959171719


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_146975.p1 GENE.S_Transcript_146975~~S_Transcript_146975.p1 ORF type:5prime_partial len:220 (-),score=40.98,Vps54|PF07928.8|2.9e-32,Vps54|PF07928.8|6.1e+02 S_Transcript_146975:220-879(-)
TTCAATACAAGAACTTGTCAGCTGGTACTTGGTGCTGGTGCCATGCAGGTGTCTGGCTTGAAATCCATCACATCTAAGCATTTGGCATTGGCGAGTCAAGTTATCAGTTTTGTATATGCTATTATTCCTGACATCCGAAGGATCCTCTTTCTCAAAGTACCCGATGCTAGAAGAGCATTGTTACAATCAGAGATTGATCGGGTTGCACAGGATTATAAGGTTCACCGAGATGAGATACATACAAAGCTGGTTCAGATTATGAAAGAGAGGTTAATGGTACATCTGCGAGGACTGCCTCAAATTGTTGAGAGTTGGAGCAAACCTGATGATGGTGACACACAACCAAGTCAGTTTGCAAGGTCACTTACGAAGGAAGTTGGCTATCTCCAACGTGTCTTATCAAGGTTGCTCCTTGAGGCAGATGTTCAATGGATTTTCAGGCAAGTGGTCATAGTTTTCCACACACAAATTTCAGAAGCTTTTTCTAGCTTGGAGATTAACACTCCACAAGCAAAAACGAGGCTTCATCGAGATGTCCAACATATTCTTGCATGCATTCATTCACTTCCTACTGATATTGCTAGTAAGAACGGTGTTGCAAACTGGGGGCACCTTGATGAATTCTCGGCTCAAAGATTTGGCAGTGAAGCAGATCCATAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_146975.p1 GENE.S_Transcript_146975~~S_Transcript_146975.p1 ORF type:5prime_partial len:220 (-),score=40.98,Vps54|PF07928.8|2.9e-32,Vps54|PF07928.8|6.1e+02 S_Transcript_146975:220-879(-)
FNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVYAIIPDIRRILFLKVPDARRALLQSEIDRVAQDYKVHRDEIHTKLVQIMKERLMVHLRGLPQIVESWSKPDDGDTQPSQFARSLTKEVGYLQRVLSRLLLEADVQWIFRQVVIVFHTQISEAFSSLEINTPQAKTRLHRDVQHILACIHSLPTDIASKNGVANWGHLDEFSAQRFGSEADP*

Click here to download the sequence:
Link to NCBI Protein BLAST