Transcript Information: S_Transcript_146976.p1


Annotated TAIR IDAT4G19490.1
Annotated Gene NameVPS54
Annotated Gene Symbol(s)ATVPS54, VPS54
Annotation TypeOrtholog
Chromosome Positionchr4:10616017-10622934 | Forward length=1034
E-Value7.1E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.53583223963451
Replicate 21.3326517182391
Replicate 31.1139907701504
Condition 2: 8 Hour
Replicate 10.71561712473601
Replicate 20.9008798109957
Replicate 31.0014156592944
Condition 3: 24 Hour
Replicate 11.7593194757526
Replicate 21.5210611796206
Replicate 31.184928260643


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_146976.p1 GENE.S_Transcript_146976~~S_Transcript_146976.p1 ORF type:5prime_partial len:149 (-),score=23.30,Vps54|PF07928.8|1.1e-32 S_Transcript_146976:185-631(-)
TTCAATACAAGAACTTGTCAGCTGGTACTTGGTGCTGGTGCCATGCAGGTGTCTGGCTTGAAATCCATCACATCTAAGCATTTGGCATTGGCGAGTCAAGTTATCAGTTTTGTATATGCTATTATTCCTGACATCCGAAGGATCCTCTTTCTCAAAGTACCCGATGCTAGAAGAGCATTGTTACAATCAGAGATTGATCGGGTTGCACAGGATTATAAGGTTCACCGAGATGAGATACATACAAAGCTGGTTCAGATTATGAAAGAGAGGTTAATGGTACATCTGCGAGGACTGCCTCAAATTGTTGAGAGTTGGAGCAAACCTGATGATGGTGACACACAAGCAAGTCAGTTTGCAAGGTCACTGACGAAGGTAATTTCTCCCTCCGTGTTTCTTTGTCCTCAGTTTTTTTTTCCTCTCCAAAGAAGGGTGTGTGGTATGGGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_146976.p1 GENE.S_Transcript_146976~~S_Transcript_146976.p1 ORF type:5prime_partial len:149 (-),score=23.30,Vps54|PF07928.8|1.1e-32 S_Transcript_146976:185-631(-)
FNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVYAIIPDIRRILFLKVPDARRALLQSEIDRVAQDYKVHRDEIHTKLVQIMKERLMVHLRGLPQIVESWSKPDDGDTQASQFARSLTKVISPSVFLCPQFFFPLQRRVCGMG*

Click here to download the sequence:
Link to NCBI Protein BLAST