Transcript Information: S_Transcript_147954.p1


Annotated TAIR IDAT5G11190.1
Annotated Gene NameIntegrase-type DNA-binding superfamily protein
Annotated Gene Symbol(s)SHN3
Annotation TypeOrtholog
Chromosome Positionchr5:3564976-3566051 | Forward length=189
E-Value1.6E-11
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.4323710806348
Replicate 22.609577259491
Replicate 31.8839354063893
Condition 2: 8 Hour
Replicate 15.0447159889992
Replicate 23.848920196082
Replicate 32.4066279554011
Condition 3: 24 Hour
Replicate 10.82211927115139
Replicate 22.5588174360392
Replicate 31.0848191141985


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_147954.p1 GENE.S_Transcript_147954~~S_Transcript_147954.p1 ORF type:complete len:186 (+),score=29.15 S_Transcript_147954:418-975(+)
ATGTTTGAGGAAAAATTTTCAACATCACTGACGTTTCGTATATTTGTTTTCAAATGCAGAAAAACGAGAATTTGGTTGGGCACATTCGAAACGGCAGAAGACGCAGCCCGGGCCTATGATGAGGCGGCCTGGCTCATGTGCGGGCCTAGGGCCCGGACCAATTTCCCTTACAACCCAAATGCCCCTCAAACCTCCTCCTCTAAGCTTCTTTCAGCCACTCTCACTGCCAAGCTTCATCGTTGTTATATGGCCTCATTGCAAGTCACTAAGAATTCTGCTATGCAAGCTCAACAAAGGGGGCCCGGCCCACAATTCTCGGGCTTGGGCAACAACATTGTTGCGAAATTAGGGGGCATGAGCAATTGGCCTATTGTTGAGCACGCGCCAACAATGACAAGCCCAATGCCCCCTAAACCCGAGCCCAATTGGGTAATGAAGGTCGAGAATGCCCAACTTGAGCAGCAGCAACAACAACAATTTGAGCCACTTGAGGAGGATCACATTGAGCAAATGATTGAGGAGTTGCTTGGTTATGGTTCGATTGAAATTGCTGTTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_147954.p1 GENE.S_Transcript_147954~~S_Transcript_147954.p1 ORF type:complete len:186 (+),score=29.15 S_Transcript_147954:418-975(+)
MFEEKFSTSLTFRIFVFKCRKTRIWLGTFETAEDAARAYDEAAWLMCGPRARTNFPYNPNAPQTSSSKLLSATLTAKLHRCYMASLQVTKNSAMQAQQRGPGPQFSGLGNNIVAKLGGMSNWPIVEHAPTMTSPMPPKPEPNWVMKVENAQLEQQQQQQFEPLEEDHIEQMIEELLGYGSIEIAV*

Click here to download the sequence:
Link to NCBI Protein BLAST