Transcript Information: S_Transcript_148454.p1


Annotated TAIR IDAT5G02860.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:654102-656561 | Forward length=819
E-Value1.4E-68
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.1515396199556
Replicate 21.7417991755933
Replicate 32.3053420104501
Condition 2: 8 Hour
Replicate 14.9104517177609
Replicate 24.8570460862564
Replicate 33.5058959876614
Condition 3: 24 Hour
Replicate 11.580879726293
Replicate 21.7892482823432
Replicate 32.9868210479743


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_148454.p1 GENE.S_Transcript_148454~~S_Transcript_148454.p1 ORF type:5prime_partial len:152 (+),score=26.61,PPR_2|PF13041.2|0.00073,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|4.7e-09,PPR_2|PF13041.2|2.6,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|2.5e-12,PPR_1|PF12854.3|1.9e-06,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|1.5e+03,PPR|PF01535.16|1.3,PPR|PF01535.16|2e-08,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.25,PPR|PF01535.16|5e+03,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|4.9,PPR_3|PF13812.2|1.6e+04 S_Transcript_148454:1-456(+)
TTGATGTACATGTACAGCCGGTCAGTTTGTTTTGAGAAAGCAGAAGAAGTTCTGGAAGATATTGTTGCAAAAGGACTGAAGCCTGATATCATTTCATACAATACTGTTATTTTTGCTTATTGTAGAAATGGTCGTTTAAGGGAAGCCTCTAGAGTTTTCTTGGAGTTGAGGGGCTCAGGGATTGTGCCTGATGTGATAACTTACAACATCTTTGTGTCAAGTTATGCCGCAAATGCAATGCTTGTAGAAGCCATTGATATGGTGCGCTGTATGATCACTGATAACTGTAGACCTAACCAGAATACATACAATTCCATTGTTGACTTTTACCGCAAATTCAATCGGCTAGATGAGGCTACCATGTTCATAAACAATCTCTGCAAGCTTGATCCATATCTCCCAAGGGATGAAGAATCAAGGTTATTTGAGCGAATAAGAAAGAAATATCATAGATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_148454.p1 GENE.S_Transcript_148454~~S_Transcript_148454.p1 ORF type:5prime_partial len:152 (+),score=26.61,PPR_2|PF13041.2|0.00073,PPR_2|PF13041.2|1.1e-14,PPR_2|PF13041.2|4.7e-09,PPR_2|PF13041.2|2.6,PPR_1|PF12854.3|1.1e+03,PPR_1|PF12854.3|2.5e-12,PPR_1|PF12854.3|1.9e-06,PPR_1|PF12854.3|0.00013,PPR_1|PF12854.3|1.5e+03,PPR|PF01535.16|1.3,PPR|PF01535.16|2e-08,PPR|PF01535.16|0.0016,PPR|PF01535.16|0.25,PPR|PF01535.16|5e+03,PPR_3|PF13812.2|6.4,PPR_3|PF13812.2|0.00013,PPR_3|PF13812.2|1.6,PPR_3|PF13812.2|4.9,PPR_3|PF13812.2|1.6e+04 S_Transcript_148454:1-456(+)
LMYMYSRSVCFEKAEEVLEDIVAKGLKPDIISYNTVIFAYCRNGRLREASRVFLELRGSGIVPDVITYNIFVSSYAANAMLVEAIDMVRCMITDNCRPNQNTYNSIVDFYRKFNRLDEATMFINNLCKLDPYLPRDEESRLFERIRKKYHR*

Click here to download the sequence:
Link to NCBI Protein BLAST