Transcript Information: S_Transcript_149979.p1


Annotated TAIR IDAT4G29090.1
Annotated Gene NameRibonuclease H-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr4:14333528-14335255 | Forward length=575
E-Value1E-60
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.46283480409009
Replicate 20.36238398307029
Replicate 30.4811148543548
Condition 2: 8 Hour
Replicate 10.74175270668289
Replicate 21.2104575109417
Replicate 30.88558593914415
Condition 3: 24 Hour
Replicate 10.1688493409901
Replicate 20.52553765974139
Replicate 30.53612075064015


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_149979.p1 GENE.S_Transcript_149979~~S_Transcript_149979.p1 ORF type:complete len:1035 (+),score=107.17,RVT_1|PF00078.23|9e-43,RVT_3|PF13456.2|6.1e+03,RVT_3|PF13456.2|3.3e-21,zf-RVT|PF13966.2|7.7e+03,zf-RVT|PF13966.2|6.2e-19 S_Transcript_149979:1825-4929(+)
ATGTCGGCAGAGGATAGGAAAACTACATTGGGTGAGCTACGTGAATGGCGAAGAAAAGAAGAAGTGCTATGGTGGCAGCGCTCAAGAGTAGATTTTCTAAAATATGGAGACTCGAACTCGGCTTGGTTTCATGAGAAGGCGAATGCTAGGAGGAAAAGAAATTTTATTTCAAAGTTAAAAAATATGAGAGGAGAAATTGTGCAAGATGATGAGGCTTTGGGGAACACTGTGATGGAATATTTTCAAGAGATATTTAGCTCATCGGGTTCAAGTGACATGGACAAAGTTCTGCAGTGCATCGAGAGGAAAGTCACGGTGGAGATGAATGAGATGCTATGCAAGCCATACTCCGCGGAGGAGATCTACGAGGCGTTAAAGCAAATGAATCCAAATAAGGCTCCGGGCCCGGATGGTATGAATGCATTCTTTTTTCAAAAATTTTGGTCTATTGTGGGTCCTTCTGTGGTTAGTTTAGTCATGCTTATTCTTAATTGTCGAGACTTCCCCCATGAAATTAACCACACTCATGTTGTGCTAATCCCCAAGAAAAAGAACCCTATCTATGTTGCGGATTTTCGACCAATTAGCCTGTGTAACGTAGTTTTCAAAATTGCTACCAAAACCATAGCTAATAGATTGAAGATCATACTCCCAAATATCATTTCCGAAAATCAAAGTGCCTTTACCCCCGGCAGATTAATTAGTGATAATATTATAGCTGCTTATGAGATTTTCCATTCCATGCATAATCAAACGGGGTCCCAAGGTAGTATGGCCTTAAAACTTGACATGAGTAAGGCTTATGATCGGGTTGAATGGAATTTTTTGGAGAGTATTATGCTTAAATTGGGCTTCTTGCCGGACTGGGTTAACATGGTTATGAAGTGTGTGACTTCGGTCTCTTACTCATTTTTAGTTAATGGGGAACCGAAAGGTTTTCTCAAGCCTACTCGTGGAATTAGACAAGGGGATCCTTTATCCCCCTATCTATTTCTACTTTGTGCGGAAGGCCTTTCGCATTTATTATCCCATTCAGTAATACATGATGGTTTTATTGGTCATACAATTTGTCAAGGTGCTCCTATGGTCTCTCACCTTTTGTTCGCAGATGATACTATAATATTTGCGAAAGCCGACACTGCTCATGCAAACAAGATGGTGGACATCCTACATCTTTACGAGAAAGCATCAGGGCAACAGATTAATAAGGAGAAGACTACTTTGTCTTTTAGCAAGGGCATCCCTACGAGTACAAGAGCTGAGATAACTCAAGTGCTAGGGGTACATCAAGTGGAACAACATGACAAATATTTGGGGCTCCCAACCCATATTGGCCGGTCCAAAAAAAAGGCTTTTCTCCCTATTAAAGACAGGGTGCAAAAGAAGCTTCAAGGGTGGATGGATAAGTATCTCTCATGGTCAGGTAAGGAAGTTCTTATTAAGGCAGTAGCCCAAGCTATTCCAACATATGCTATGAGTGTATTCAAACTCCCAGAAGTTTTTTGTAATGATTTGCAACAACTTGTTCGCAAGTTTTGGTGGGGACATAAGGATGGGAAAAGGAAGATTCATTGGGTTAAATGGGGGAGACTTTGCAAATCAAAAGATGATGGTGGTTTGGGCTTTCGAGACTTAGTGGCTTTTAATGAGGCAATGCTGGCAAAACAGGTATGGAGGCTTCTTAAAGACCCGGGCACACTTAGTGCAAGACTCTTGAAGGCCAAATATTACCCTCAGAGCCATATATGTGATGCGGTCTTGGGGCACAAACCTAGCTATTTATGGAGGAGCTTGATGGGTGTACAAAACATTGTGCAAATGGGGCTCCGATGGGTGGTAGGTAATGGAGACTCAATTCGGGTTTGGAAAGACCCATGGCTTCCTAGGCCTACAACTTTCAAACCCATTCTTAATGTGGCTGCTCTAGATGGGGATATGAGGGTTGGGGAGTTAGTAGATAAGGAGCAAGGGAGATGGAACGAGCAACTTATTCGAGCCATTTTTCTTCCCATGGATGCAAACCTTATCCTTAATATCCCTCTATGCTTGACATGGCCTAATGATCGCCTCGTTTGGCACTATGAGTCCACGGGATGTTTCACAGTGAAGTCCGCTTACCGCCTTATTATGAACTTGAGAGATAGTGATGGGGTGGGGTCAAGTGCAGGACCACACATGAATTTTTGGAGATGCATTTGGAGGCTAGACATCCCCCCACGTATTAAAAACTTTGCATGGAGGGCCACTGCTGATGTTTTGCCAACTAATTATAATATAGCTAAGAGGGTGCCACATAGGGAGTTTGGATGCCAAATGTGTGGGGCGCAAGAGGACACAGCGTTACATGCACTCTTATCATGCCCATGGTCTCGTGCTCTCTGGGAAGGTAGTGGTTGGCCGCAAGTTTTTCTTGAAGGGAATTTTCGGTGTGTTCGTGATTGGTGGGAGAATATTTATGGGGCAGCGGATATGGACGACTTTGGAGCTTTTGTTGCAACAGCATGGGCAATCTGGGGAGAGCGGTGCAAGCTATTGTATGGGGAGAACCATGAACAGTGTATGCAGGTGTGTGAGAACGCAAGAAAATTTGTGGTGAGTTACAGAGAAGCAAGAATGAGGACCGAAAGTCTACAAGCTGCCAAAGCTTTTTGGAGACCAGCTGATCCTGGCATTTGGAAATTGAACGTTGACGCAGGCAAATTGGGAGACTGGGGGGTTGGCTGGGGTATGGTAGTGAGGGATGCAACGGGTGAGCCAGTGGCTATGGGAGTACACCAACATGAGGGACATTTCAAAGCGGAACTGGAGGAGGCTAGAGCAATTCTTTTTGGCGTACGCTCCGCTTGGGAAACAGGCTATAGATCACTAGTGGTGGAATCCGATTGTCTCAGTGTTATCTCAAAGCTACGGAAACATCCAACCATCCTCTCTCCTATTGGTTTTATTTTGGAGGACATTCATGCGTGGGCATCAAAATTTGATTTTATTGTTTTTTCACATGTATACAGGGAAGGCAACAGAGTTGCTCATTGTCTTGCTCAATTCCAACCCTATAAGGTGGAAGAGAGATTTTGGTTGGAAGATATGCAAACCAATTTAGTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_149979.p1 GENE.S_Transcript_149979~~S_Transcript_149979.p1 ORF type:complete len:1035 (+),score=107.17,RVT_1|PF00078.23|9e-43,RVT_3|PF13456.2|6.1e+03,RVT_3|PF13456.2|3.3e-21,zf-RVT|PF13966.2|7.7e+03,zf-RVT|PF13966.2|6.2e-19 S_Transcript_149979:1825-4929(+)
MSAEDRKTTLGELREWRRKEEVLWWQRSRVDFLKYGDSNSAWFHEKANARRKRNFISKLKNMRGEIVQDDEALGNTVMEYFQEIFSSSGSSDMDKVLQCIERKVTVEMNEMLCKPYSAEEIYEALKQMNPNKAPGPDGMNAFFFQKFWSIVGPSVVSLVMLILNCRDFPHEINHTHVVLIPKKKNPIYVADFRPISLCNVVFKIATKTIANRLKIILPNIISENQSAFTPGRLISDNIIAAYEIFHSMHNQTGSQGSMALKLDMSKAYDRVEWNFLESIMLKLGFLPDWVNMVMKCVTSVSYSFLVNGEPKGFLKPTRGIRQGDPLSPYLFLLCAEGLSHLLSHSVIHDGFIGHTICQGAPMVSHLLFADDTIIFAKADTAHANKMVDILHLYEKASGQQINKEKTTLSFSKGIPTSTRAEITQVLGVHQVEQHDKYLGLPTHIGRSKKKAFLPIKDRVQKKLQGWMDKYLSWSGKEVLIKAVAQAIPTYAMSVFKLPEVFCNDLQQLVRKFWWGHKDGKRKIHWVKWGRLCKSKDDGGLGFRDLVAFNEAMLAKQVWRLLKDPGTLSARLLKAKYYPQSHICDAVLGHKPSYLWRSLMGVQNIVQMGLRWVVGNGDSIRVWKDPWLPRPTTFKPILNVAALDGDMRVGELVDKEQGRWNEQLIRAIFLPMDANLILNIPLCLTWPNDRLVWHYESTGCFTVKSAYRLIMNLRDSDGVGSSAGPHMNFWRCIWRLDIPPRIKNFAWRATADVLPTNYNIAKRVPHREFGCQMCGAQEDTALHALLSCPWSRALWEGSGWPQVFLEGNFRCVRDWWENIYGAADMDDFGAFVATAWAIWGERCKLLYGENHEQCMQVCENARKFVVSYREARMRTESLQAAKAFWRPADPGIWKLNVDAGKLGDWGVGWGMVVRDATGEPVAMGVHQHEGHFKAELEEARAILFGVRSAWETGYRSLVVESDCLSVISKLRKHPTILSPIGFILEDIHAWASKFDFIVFSHVYREGNRVAHCLAQFQPYKVEERFWLEDMQTNLV*

Click here to download the sequence:
Link to NCBI Protein BLAST