Transcript Information: S_Transcript_15025.p1


Annotated TAIR IDAT2G47680.1
Annotated Gene Namezinc finger (CCCH type) helicase family protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr2:19545828-19550871 | Reverse length=1015
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 113.998595350399
Replicate 213.683692836457
Replicate 313.483649050326
Condition 2: 8 Hour
Replicate 121.304462554309
Replicate 219.781192958188
Replicate 320.91839804218
Condition 3: 24 Hour
Replicate 118.11474636855
Replicate 215.924719419691
Replicate 315.940134049946


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_15025.p1 GENE.S_Transcript_15025~~S_Transcript_15025.p1 ORF type:complete len:1019 (+),score=155.42,Helicase_C|PF00271.27|2e-13,zf-CCCH|PF00642.20|0.00028,zf-CCCH|PF00642.20|0.0039,DEAD|PF00270.25|8.8e-06 S_Transcript_15025:127-3183(+)
ATGGGGGAGCCTCCGTCATCGCCTACACCATCTTCCTGCTCGTCGTCGTTCTCTTCTTCTTCGCCATTCTCGTCGTTGCCGATCATGGCGTTGCGAGAGAAAATTGTCGATAAAATTAGGGAGAATCGTGTTACTCTCATCGTTGGCGAAACTGGTTGCGGGAAAAGCTCACAAGTTCCTATGTTTCTGCGGGAAGCAAACATGACCCCTGTTCTATGTACTCAGCCTCGAAGATTTGCTGTTGTAGCTGTTTCTAAAATGGTAGCAAAAGCCCTGCAATGTGAAGTGGGAGAAGAAGTCGGCTACCACATTGGTCACTCTAAGGTCCTATCGTCCAGCTCAAAGATTATCTTTAAAACTGCTGGTGTTCTGCTAGAGGAAATGCGAGACAAGGGGAGGAATGCGCTCAACTACAAGGCTATCATCCTAGATGAAGTGCATGAGAGATCTGTGGAATCTGATCTCGTTCTTGTCTGTGTAAAGCAGTTTCTTCTGAGACATAAGGATATAAGGCTGGTGTTGATGTCTGCAACTGCTGATATTTCTAGATACAGGGATTACTTTAAGGATCTTGAAAGAGGTGAGAGAGTGGAAGTCCTTGCTATTCCTAGCTCAAGTCAACACTCCAATTTTCAGCGTAAAGTCCTGTATCTTGAACAGGTCACTGAGCTTCTTGGGGAGAGTTCAGATTCAACAGACTCATTATCTGTTAAATACTGTTATGGTACATCACCATCCATGGCAAAGGCTGATATTAAGCGTGATGTCCACAAGCTTATTCATGAACTTGTGTTGCATATACATAACATTGAGCCTGACCTTACAAAAAGCATTTTGATTTTTCTTCCGACATACTATTCACTTGAGCAACAATGGCTCCTTTTAAAGCCTCTCAGTTCGTCTTTCAAGGTTCATATTTTACACAGCAGTGTGGATACAGAGCAGGCTTTAATGACTATGAAGATATGGAAGTCCCATCGTAAGGTGATATTAGCCACCAATATTGCAGAATCATCTGTGACTATTCCTGAAGTTGCACATGTAATTGATTCTTGCCGTTCTTTACAAGTATATTGGGATGAGAATAGGAAAAGGGATACTGCAGAGCTCGTTTGGGCTTCTAAATCTCAGGCGGAGCAACGTAAAGGAAGAACTGGTCGAACATGCGATGGCCAGATCTACCGGTTGGTTACAGGATCATTTTTCTCTAAGCTTCCAGAATTCGAATCTCCTGCAATTCTCAAGTTATCATTGAGATTACAAGTGCTTCTTATCTGCTGTGCTGAATCAAAATCAATCAATGACCCCAAAGTTTTGTTGCAAAAGGCTTTGGACTCACCTGATCCCGAGATTATAGAGGATGCTCTGAGCTTACTTGTGCACATCAAGGCCCTTAAGAGAGCGCATGTAAGAGGTCGATATGAGCCGACATTCTATGGAAGATTGTTAGCAACTTTGTCCTTGTCATTTGATGCTTCCGTGCTCATTCTGAAATTTGGTGCTATTGGAATGCTACGTGAGGGCATTTTACTGGGAATAATAATGGACATGCAGCCACCACCCATTGTTCGCCCCTTTGGCCAGGATAATTTGTTTACGGAATATACAGATTCCTACTATGCTGTGGGGGAAGCGAATCCTTCTCTGATTGGTAGGAAGGAGGAGATCTTCTTGGCAAATCTGTGTGCTTACCAATTTTGGCAACGCATATATAAGGATAACCTTCGCCTCCAGCGTTTGAAGCAGCTTTTGGATGTCGATGAGATAAAAGCTCCGCAAGCATTGCTCTCCAAAATCGAAGAAGAGTGGTGCTCCTTTCATAACCTATTGCAGTCGTCTATGCATCAAATCTCTGAAATATATGATGACATTCTGTGTTCATTGCATCGTTATCGGCCGAAATTTCTTGCCACATCTTCTGACTGTCCATCCTACTACCATCCTTACGAGTTTAGGCATACGTGTTTTCTAGAGTGTCCGCCCAGTAACGATGCTGTTGAGGCTGATGAGCAAAATGAAACCAAAAAGTGCATTTCAGTACCTTTTGTAGCCTCTCACCACTTTCAAGTTCAAAGTGTGGCAGAGAAGTTTGCAAATATTATTAAAGAGATCAGAGTTGAGCACACAAAAGAATCGACTGATGATCATCATCAATATGCCGATGAGGAGGGGGCATTTCTTAATGAGGAAGTCTCATTGTGTAGGTATTTTGTCAAAGGGCTCTGTAATAGGGGTGGTGATTGCATATTTTCCCATTCACTGCTAGCTCAACGCCCTGTATGCAAATTCTTTGCCTCTTTCCAGGGTTGTCGAAATGGAGATTCATGTTTCTTTTCTCATGATCTTGGTCCACATGTTCTGTCTCCTGGGAAAGATTTTTGTGTTCCAGAAGATGAAGATGCTGATGTTGATGGTCTGGTTAAACTATTTCCCACTTCTTCCGATGGTAGCATATTGCTGTTAGACGATACAGATTTACATTTTTCAACAAAGTTTTCTCAGCATTATGATCCATCAAAAATTGTTTCCACAACACCGTTGTCAGAGACATCTATATTTGATCCATCACTGTCCAATGTTAAAATTCTGTGGGGCATCGCTTCACCTTTTCAAATTTTTACCTTCGGAGCCGTTGAGACTCATATTACTTGGGATGCAGTGAGGTGTCTCTTCTGGTTTCCAAATTTTGATAGTTGTGATGAAAATCCAGAAAGACAAAGATGTCTTGTGCAGAATTTCTTCGAGCATTTAGCAATCCGTATGCTGGCTGACACATTGTTCGATATGCATGTGATTCTTATCATGAACAATATTAGGTTCTCACAACTGCAGGTGGAGAAGTTGGGTAGAGATTGCTTCTTCCTACTGTCAAAGTCACTTCCATTCAGTGAAACAAGCTTCGGCTTGTTGCCAGATGCTGTCAATACCAAAAAGCCTTTAATGGTATCGAGACCCATTACGTATGTATTTAGCTTGCATCCACCTTCTGATCTGCAGTTTGGAAATTACACTGCTGCCCTAACCGATGGTCTGCATGGTATCCGGTCTAAGGAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_15025.p1 GENE.S_Transcript_15025~~S_Transcript_15025.p1 ORF type:complete len:1019 (+),score=155.42,Helicase_C|PF00271.27|2e-13,zf-CCCH|PF00642.20|0.00028,zf-CCCH|PF00642.20|0.0039,DEAD|PF00270.25|8.8e-06 S_Transcript_15025:127-3183(+)
MGEPPSSPTPSSCSSSFSSSSPFSSLPIMALREKIVDKIRENRVTLIVGETGCGKSSQVPMFLREANMTPVLCTQPRRFAVVAVSKMVAKALQCEVGEEVGYHIGHSKVLSSSSKIIFKTAGVLLEEMRDKGRNALNYKAIILDEVHERSVESDLVLVCVKQFLLRHKDIRLVLMSATADISRYRDYFKDLERGERVEVLAIPSSSQHSNFQRKVLYLEQVTELLGESSDSTDSLSVKYCYGTSPSMAKADIKRDVHKLIHELVLHIHNIEPDLTKSILIFLPTYYSLEQQWLLLKPLSSSFKVHILHSSVDTEQALMTMKIWKSHRKVILATNIAESSVTIPEVAHVIDSCRSLQVYWDENRKRDTAELVWASKSQAEQRKGRTGRTCDGQIYRLVTGSFFSKLPEFESPAILKLSLRLQVLLICCAESKSINDPKVLLQKALDSPDPEIIEDALSLLVHIKALKRAHVRGRYEPTFYGRLLATLSLSFDASVLILKFGAIGMLREGILLGIIMDMQPPPIVRPFGQDNLFTEYTDSYYAVGEANPSLIGRKEEIFLANLCAYQFWQRIYKDNLRLQRLKQLLDVDEIKAPQALLSKIEEEWCSFHNLLQSSMHQISEIYDDILCSLHRYRPKFLATSSDCPSYYHPYEFRHTCFLECPPSNDAVEADEQNETKKCISVPFVASHHFQVQSVAEKFANIIKEIRVEHTKESTDDHHQYADEEGAFLNEEVSLCRYFVKGLCNRGGDCIFSHSLLAQRPVCKFFASFQGCRNGDSCFFSHDLGPHVLSPGKDFCVPEDEDADVDGLVKLFPTSSDGSILLLDDTDLHFSTKFSQHYDPSKIVSTTPLSETSIFDPSLSNVKILWGIASPFQIFTFGAVETHITWDAVRCLFWFPNFDSCDENPERQRCLVQNFFEHLAIRMLADTLFDMHVILIMNNIRFSQLQVEKLGRDCFFLLSKSLPFSETSFGLLPDAVNTKKPLMVSRPITYVFSLHPPSDLQFGNYTAALTDGLHGIRSKE*

Click here to download the sequence:
Link to NCBI Protein BLAST