Transcript Information: S_Transcript_150598.p1


Annotated TAIR IDATMG00300.1
Annotated Gene NameGag-Pol-related retrotransposon family protein
Annotated Gene Symbol(s)ORF145A
Annotation TypeHomolog
Chromosome PositionchrM:89617-90054 | Reverse length=145
E-Value5E-09
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.27770088245406
Replicate 20.11511020638703
Replicate 30.28866891261288
Condition 2: 8 Hour
Replicate 10.037087635334144
Replicate 20.038907562851699
Replicate 30.14828415725204
Condition 3: 24 Hour
Replicate 10.15196440689109
Replicate 20.35473792032544
Replicate 30.57023752568089


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_150598.p1 GENE.S_Transcript_150598~~S_Transcript_150598.p1 ORF type:3prime_partial len:575 (+),score=39.56,UBN2|PF14223.2|2e-20,rve|PF00665.22|6.4e+03,rve|PF00665.22|5.1e-10,UBN2_2|PF14227.2|8.4e-10,UBN2_3|PF14244.2|9e-09,gag_pre-integrs|PF13976.2|2e-08,gag_pre-integrs|PF13976.2|9.7e+03 S_Transcript_150598:85-1806(+)
ATGAGAACATCATCCATTTTTCATCATTCTTTTATATGCTATCAGAGTTCCGATCCAAAACCACGACCACATCTCGTCGGTCACGATCTCTTTCAATATGTTGATGGCTCTCTTCCATGTCATCCACCAGTTCTCACCACTGATGGCAAAAACACTGACAATCCAGAATTTTCTTTTTGGTTTCGCCAGGACAAACTCCTCTTTGGTGCTCTTATTGGTACACTCTCACAAAATCTTGTTCCCCTGGTTTCCCAAGCCACTACATCTAAAATTCTTTGGGACATCCTTGCCAAAACCTACGCCACCCCTAGTCGTGGGCACATCAAACAACTCAAAGATCAATTAAATCACATCACCAAAGGCAATCGTTCCATAACTAAATTTATGCAAACCATTAAAGCATGTGTTGATCAACTTGCAACTTTAGGGAAGCCGGTGGAACATGAAGACGTCGTTGACCGCGTCCTTTTCGGTCTAGGACACGACTACAATTCTGTGATTGAATCTGTCAACACAAGGGACACTTCTATATCCTTTGAAGAATTGCATGAAAAACTCATCAATAAGGAACTCTCGCTGAAACAAAGTCGCCAAGATCCCGCTCTTCCTACAACTGCTTTCGCTGTCAATGTACGGAACAACACTCGCTATTACGGTAACAACAACCAATCACATAACCCAGGTATCCTCCAAACTCCAAGTCATTACAACAAACAACCAAAAGCCTTTCTGGGCAAATGTCAATGGTGCAGGGAACAAGGGCATGTTGTTGCTCAATGTCCAGTTTTTATTAAACGGTTTCCTAATGTCACTCCTCCCCCTCCACAAAGCAATAGGCCATACTCAAAACCGCAAGCCAACACCGCTACGCTCAATGACTCCGCCTTAAACTCTTCCTGGCTACTAGATAGTGGTGCATCACACCATGTCACAACTGACCTCAATAACCTCTCCCTTCATGCTCCTTACGATGGCACCAATGAATTGATAGTTGGTGATGGTATGGGTCTCACAATTACTCACTTTGGTTCTGTTTCTTTCTCCTCCTTAAAACTTGATAATGTTCTTGTAGTTCCTACTGTGACTAAAAATATCATCTCCGTTTCCCAACTCTGTCAAGATAATAATATATCTATCATCTTCTCACCAAAATATTTCCTTGTGAAGGATCACCAATCGGGAGCAATCCTCTTCAAGGGACAAGTCAAATCAGGAACACATGAAGTTCAATTCAACTCTCCTACAGTCTATGCAAGTCACAAATCCACCTCTCTTGATTGGCATCATCGTTTAGGCCATCCCTCTCAACATGCTTTTAGACAACTTATTTCCAAAAATAAACTCAATGTCTCCAGTATCTCAACTTTAGATTGTACCTCATGTGCTTGCAATAAAAGCCATAAATTACCATTCTCTATCTCCTCTATTACTTCTACTACTCCTTTGCAATATGTTTACACTGATTTATGGACTGCTCCTATCTACTCTCATGATGGTTACAAATACTATATAATTTTTGTTGATCACTACACCAAATATATTTGGCTATACCACTTAAAACAAAAGTCAAACACAAAAAATATCTTCATTCGATTCAAAGCTCTAGTCGAAAAATATTTTCAACTACCTCTGAAAACCTTCTATTCTGACAATGGGGGAGAATATGAAACATTAAACACCTACCTGTCCATCAATGGCATTTCTCACCTCACAACCCCCCCT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_150598.p1 GENE.S_Transcript_150598~~S_Transcript_150598.p1 ORF type:3prime_partial len:575 (+),score=39.56,UBN2|PF14223.2|2e-20,rve|PF00665.22|6.4e+03,rve|PF00665.22|5.1e-10,UBN2_2|PF14227.2|8.4e-10,UBN2_3|PF14244.2|9e-09,gag_pre-integrs|PF13976.2|2e-08,gag_pre-integrs|PF13976.2|9.7e+03 S_Transcript_150598:85-1806(+)
MRTSSIFHHSFICYQSSDPKPRPHLVGHDLFQYVDGSLPCHPPVLTTDGKNTDNPEFSFWFRQDKLLFGALIGTLSQNLVPLVSQATTSKILWDILAKTYATPSRGHIKQLKDQLNHITKGNRSITKFMQTIKACVDQLATLGKPVEHEDVVDRVLFGLGHDYNSVIESVNTRDTSISFEELHEKLINKELSLKQSRQDPALPTTAFAVNVRNNTRYYGNNNQSHNPGILQTPSHYNKQPKAFLGKCQWCREQGHVVAQCPVFIKRFPNVTPPPPQSNRPYSKPQANTATLNDSALNSSWLLDSGASHHVTTDLNNLSLHAPYDGTNELIVGDGMGLTITHFGSVSFSSLKLDNVLVVPTVTKNIISVSQLCQDNNISIIFSPKYFLVKDHQSGAILFKGQVKSGTHEVQFNSPTVYASHKSTSLDWHHRLGHPSQHAFRQLISKNKLNVSSISTLDCTSCACNKSHKLPFSISSITSTTPLQYVYTDLWTAPIYSHDGYKYYIIFVDHYTKYIWLYHLKQKSNTKNIFIRFKALVEKYFQLPLKTFYSDNGGEYETLNTYLSINGISHLTTPP

Click here to download the sequence:
Link to NCBI Protein BLAST