Transcript Information: S_Transcript_151234.p2


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-16
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.67803824803008
Replicate 20.42158196606716
Replicate 30.35240896975033
Condition 2: 8 Hour
Replicate 14.210745858797
Replicate 24.5598672386704
Replicate 33.5300129791689
Condition 3: 24 Hour
Replicate 10.69569692645204
Replicate 20.86613292648461
Replicate 30.96389978618278


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_151234.p2 GENE.S_Transcript_151234~~S_Transcript_151234.p2 ORF type:complete len:157 (+),score=31.39,UBN2_3|PF14244.2|3.7e-39 S_Transcript_151234:376-846(+)
ATGGCCACTTCTTCTTCTTCTGACAGCACAACAAATTCTACAGTTCTTGATTCAAGCAATCCTTTATACTTACATCCTGCAGATCATCCAGGGCTGGTTTTAGTGACAAGTGCATTTGATGGAAAAGGATATGGTGCCTGGAAGAGAGCTTTGATGATAGCTTTGTCTGCTAAGAACAAAATATGTTTTGTTGATGGAACTTGCACTAAACCAGCAGCTAATGCATCTGAGTATAGACTTTGGGAGAGGTGCAATGATATGGTGATTTCGTGGTTGTTAAATTCCTTAAGTAAAGAGATAGCTGAGAGTGTACTTTATAATACAACTGCTCAAGAAATTCGGAAAGAATTGGAGGACAGATTTGGAAAGTGTAATGGAGCACAGTTGTATCATATGCAATCAGATGTTAATAATCTGTCACAAGGTAGTTCTGACATTGCTACCTATTACACTAGAGCTAAGAGACTTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_151234.p2 GENE.S_Transcript_151234~~S_Transcript_151234.p2 ORF type:complete len:157 (+),score=31.39,UBN2_3|PF14244.2|3.7e-39 S_Transcript_151234:376-846(+)
MATSSSSDSTTNSTVLDSSNPLYLHPADHPGLVLVTSAFDGKGYGAWKRALMIALSAKNKICFVDGTCTKPAANASEYRLWERCNDMVISWLLNSLSKEIAESVLYNTTAQEIRKELEDRFGKCNGAQLYHMQSDVNNLSQGSSDIATYYTRAKRL*

Click here to download the sequence:
Link to NCBI Protein BLAST