Transcript Information: S_Transcript_151496.p1


Annotated TAIR IDAT1G76660.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr1:28769157-28771036 | Reverse length=431
E-Value1.8E-63
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.2378140109386
Replicate 21.2827203231113
Replicate 30.96502688809538
Condition 2: 8 Hour
Replicate 11.2398482742519
Replicate 21.5608266492833
Replicate 31.3632228119465
Condition 3: 24 Hour
Replicate 11.2700513657322
Replicate 20.92236442461879
Replicate 30.146639793053


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_151496.p1 GENE.S_Transcript_151496~~S_Transcript_151496.p1 ORF type:internal len:172 (-),score=15.53 S_Transcript_151496:3-515(-)
CTTAATTGTTGTTCTAGTTCTCCGGCCAACGCTTTACTTAGACTAGATCAACAATTAAGGTACGCGAAACGCGACCTGGTTGACGCTTCTGTGCAACATAGTGGAGTACTTCGCAGTATGAGTCAGCGCAAGAAATGGGGAGGATGTTGGGGTGGATTATCCTGTTTTCGATCACAGAAGGGTGGAAAGCGTATCGTACCAGCATCTCGTACACCAGAAGGCAGCACAGCAGCAAACCAATCTAATGGGCCACAGGGCGTTGGTTTACCGAACCAGGCTACTTCATTAGCCCCTCATCTTCTAGCTCCTCCTTCTTCTCCAGCATCCTTTACAAATTCTGCACTCCCTTCTACTGCTCAATCCCCAAGTTGTATCCTCTCGATGTCTGCCAATTCACCTGGGAATCCTTCATCAACTATGTTTGCAACTGGGCCATATGCTCATGAGACACAACTGGTGACCCCTCCCGTATTTTCAACCTTTACCACTGAGCCTTCAACTGCTCCTTTGACC

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_151496.p1 GENE.S_Transcript_151496~~S_Transcript_151496.p1 ORF type:internal len:172 (-),score=15.53 S_Transcript_151496:3-515(-)
LNCCSSSPANALLRLDQQLRYAKRDLVDASVQHSGVLRSMSQRKKWGGCWGGLSCFRSQKGGKRIVPASRTPEGSTAANQSNGPQGVGLPNQATSLAPHLLAPPSSPASFTNSALPSTAQSPSCILSMSANSPGNPSSTMFATGPYAHETQLVTPPVFSTFTTEPSTAPLT

Click here to download the sequence:
Link to NCBI Protein BLAST