Transcript Information: S_Transcript_151545.p1


Annotated TAIR IDAT3G15390.1
Annotated Gene Namesilencing defective 5
Annotated Gene Symbol(s)SDE5
Annotation TypeOrtholog
Chromosome Positionchr3:5196689-5199531 | Reverse length=490
E-Value3.1E-73
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.3608307547338
Replicate 22.2685529585348
Replicate 31.4501344904444
Condition 2: 8 Hour
Replicate 12.1497369271303
Replicate 22.1650176102961
Replicate 32.4496034546047
Condition 3: 24 Hour
Replicate 10.79275786861027
Replicate 21.2337155495189
Replicate 31.83063225521


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_151545.p1 GENE.S_Transcript_151545~~S_Transcript_151545.p1 ORF type:5prime_partial len:496 (+),score=124.23,DUF1771|PF08590.6|1.8e-13 S_Transcript_151545:3-1490(+)
CCAAGAAGCCTCCTTGTACTCTCGCCATTATTCTCTCAATCTCTTGTCATGGAAACAGTTAGTCCGTGCAGTTCGTCTCTCGGGGATGTCAATAGGGATATTGAGCTGCTGCTTGAAGCTTTTGGATCAGCTTTTTCACTTGAGGCCATAACCTCTGCTTACTCCCAGGCGAGGCGCAACGTGGAGTTGGCCGGTGTGATTCTTTATGACTTGCAAGGAGATACTTCTGCATCAATGACAAGTGGATCCAAACATGGACAGGTTGCAGGCACCTCACTATCATCAGTGTCATCTTCAGAAGATGCTTCACAGCATCAGTTATCTGCAGATGGACATGATACATGCCTTGGGCCAAGCAGCATTGTTTCCAGGGCCCCTCGTGTGGAAAAGTCAAGCTCGAGACTGTCAGCAAATGGATCTCTGAAAAGTCAGCCATCTGAGGAATCACTTGCTATCTCATGCGGCAGTAGTGGGAAGGATAGCAATAACATGCCTAAAGACATTGGAGATTTTTTGTTCAAAATGCTTGGAGAAGGTTTTCAACTTGACCAGAAAGTGATCCATAAAGTTCTTGGCCTCTGTGGATATGATCTGGAAAAGAGTATGGAAACACTTGTTGACCTATCAGCTTCAAGCCTTGAAAAGAGTGATGATGTTGTGAGCACAAGCCTGACTACTGACAGTGAGCTGTATCTAAAGATTGGCCTGCCTCCGTGTCCCGAGAGATCACAGTTTCCCGATTCTTCTCCGAGGTCTGGGAACCAAAATGGGAAACAATCACGTAGGAGAAACAAAGATCAGGGTGATCTGCAGAGGGAAATTTTGGGGTCTTTGTTCACTGCTCCTGAAAGAGTAGAGGAGCGGCCCAAACAAGCAAATACTCGAAATAGAGTCTGGAGATCAGGTGCATTTGGAAGACCTGTTGTTGAACCTCTGAAAGAGACTAAAATAGAGCAGACGTTTGTTGCAGTGAAACCACTAGTAGATGTCAAAGAAGATGAAGAGGGTGAAAACAGCTTCAAAGTCCTTCGCCAAGCTGTCAAGGAGTACTGGGCTATTATGAAGGAATACTACAAAGCTGCTGTTGAGGCATATTCTAAGGGAGATCAAGAGCGAGCTTTCAAACTTATGAAAGAGGGTCAATTTTATAACATGAAGGCTCGAGAAGCTGACGAAAAGTCCGCACAAAAGCTTTTGGAAACAAGTGATGAGGAAATGTTGCTCAATTTGAGTACCCATGAACCAAAGGAAGCAGTTAAACTCCTGAAGCTTCATCTATCTAATCTTGCTGGCATCCCAAGTATACCTTTTCTCAAGGTCACCGTGGGAAATGACGACGGCGAGAGCAAATGTGGGGGTCCGAAACGATTGGTTCTAAAGCTTTTGGAGAGAGAATCGATCAAATGGGCTGTAGTAGACGATGGAAAGACAATAGTGATTCAGCTGGCTGAAATCAATCCAAAGACTTTGAGTTTTGTCAAAAAGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_151545.p1 GENE.S_Transcript_151545~~S_Transcript_151545.p1 ORF type:5prime_partial len:496 (+),score=124.23,DUF1771|PF08590.6|1.8e-13 S_Transcript_151545:3-1490(+)
PRSLLVLSPLFSQSLVMETVSPCSSSLGDVNRDIELLLEAFGSAFSLEAITSAYSQARRNVELAGVILYDLQGDTSASMTSGSKHGQVAGTSLSSVSSSEDASQHQLSADGHDTCLGPSSIVSRAPRVEKSSSRLSANGSLKSQPSEESLAISCGSSGKDSNNMPKDIGDFLFKMLGEGFQLDQKVIHKVLGLCGYDLEKSMETLVDLSASSLEKSDDVVSTSLTTDSELYLKIGLPPCPERSQFPDSSPRSGNQNGKQSRRRNKDQGDLQREILGSLFTAPERVEERPKQANTRNRVWRSGAFGRPVVEPLKETKIEQTFVAVKPLVDVKEDEEGENSFKVLRQAVKEYWAIMKEYYKAAVEAYSKGDQERAFKLMKEGQFYNMKAREADEKSAQKLLETSDEEMLLNLSTHEPKEAVKLLKLHLSNLAGIPSIPFLKVTVGNDDGESKCGGPKRLVLKLLERESIKWAVVDDGKTIVIQLAEINPKTLSFVKK*

Click here to download the sequence:
Link to NCBI Protein BLAST