Transcript Information: S_Transcript_151546.p1


Annotated TAIR IDAT3G15390.1
Annotated Gene Namesilencing defective 5
Annotated Gene Symbol(s)SDE5
Annotation TypeHomolog
Chromosome Positionchr3:5196689-5199531 | Reverse length=490
E-Value5E-50
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.3393851825145
Replicate 20.14483231657012
Replicate 30.84747802572344
Condition 2: 8 Hour
Replicate 10.83994972802712
Replicate 20.48953716935945
Replicate 30.69964488856613
Condition 3: 24 Hour
Replicate 10.33460434230669
Replicate 20.94225912461838
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_151546.p1 GENE.S_Transcript_151546~~S_Transcript_151546.p1 ORF type:5prime_partial len:457 (+),score=114.97,DUF1771|PF08590.6|1.6e-13 S_Transcript_151546:3-1373(+)
CCAAGAAGCCTCCTTGTACTCTCGCCATTATTCTCTCAATCTCTTGTCATGGAAACAGTTAGTCCGTGCAGTTCGTCTCTCGGGGATGTCAATAGGGATATTGAGCTGCTGCTTGAAGCTTTTGGATCAGCTTTTTCACTTGAGGCCATAACCTCTGCTTACTCCCAGGCGAGGCGCAACGTGGAGTTGGCCGGTGTGATTCTTTATGACTTGCAAGGAGATACTTCTGCATCAATGACAAGTGGATCCAAACATGGACAGGTTGCAGGCACCTCACTATCATCAGTGTCATCTTCAGAAGATGCTTCACAGCATCAGTTATCTGCAGATGGACATGATACATGCCTTGGGCCAAGCAGCATTGTTTCCAGGGCCCCTCGTGTGGAAAAGTCAAGCTCGAGACTGTCAGCAAATGGATCTCTGAAAAGTCAGCCATCTGAGGAATCACTTGCTATCTCATGCGGCAGTAGTGGGAAGGATAGCAATAACATGCCTAAAGACATTGGAGATTTTTTGTTCAAAATGCTTGGAGAAGGTTTTCAACTTGACCAGAAAGTGATCCATAAAGTTCTTGGCCTCTGTGGATATGATCTGGAAAAGAGTATGGAAACACTTGTTGACCTATCAGCTTCAAGCCTTGAAAAGAGTGATGATGTTGTGAGCACAAGCCTGACTACTGACAGTGAGCTGTATCTAAAGATTGGCCTGCCTCCGTGTCCCGAGAGATCACAGTTTCCCGATTCTTCTCCGAGGTCTGGGAACCAAAATGGGAAACAATCACGTAGGAGAAACAAAGATCAGGGTGATCTGCAGAGGGAAATTTTGGGGTCTTTGTTCACTGCTCCTGAAAGAGTAGAGGAGTGGTCCAAACAAGCAAATACTCAAAATAGAGTCTGGAGATCAAGTGCATTTGGAAGACCTGTTGTTGAACCTCTGAAAGAGACTGAAATAGAGCAGACATTTGTTGCAGTGAAACCGCTAGTAGATGTCAAAGAAGATGAAGAGGGTGAAAACAGCTTCAAAGTCCTTCGCCAAGCTGTCAAGGAGTACTGGGCTATTATGAAGGAATACTACAAAGCTGCTGTTGAGGCATATTCTAAGGGAGATCAAGAGCGAGCTTTCAAACTTATGAAAGAGGGTCAATTTTATAACATGAAGGCTCGAGAAGCTGACGAAAAGTCCGCACAAAAGCTTTTGGAAACAAGTGATGAGGAAATGTTGCTTGATTTGAGTACCCATCAACCAAAGGAAGCAGTTAAAATCCTGAAGCTTCATCTATCTAATCTTGCTGGCATCCCAAGTAGGCCACTCGTTATTGCTTTTTGCTTCGACTACAGGTATACCTTTTCTCAAGGTCACCGTGGGAAATGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_151546.p1 GENE.S_Transcript_151546~~S_Transcript_151546.p1 ORF type:5prime_partial len:457 (+),score=114.97,DUF1771|PF08590.6|1.6e-13 S_Transcript_151546:3-1373(+)
PRSLLVLSPLFSQSLVMETVSPCSSSLGDVNRDIELLLEAFGSAFSLEAITSAYSQARRNVELAGVILYDLQGDTSASMTSGSKHGQVAGTSLSSVSSSEDASQHQLSADGHDTCLGPSSIVSRAPRVEKSSSRLSANGSLKSQPSEESLAISCGSSGKDSNNMPKDIGDFLFKMLGEGFQLDQKVIHKVLGLCGYDLEKSMETLVDLSASSLEKSDDVVSTSLTTDSELYLKIGLPPCPERSQFPDSSPRSGNQNGKQSRRRNKDQGDLQREILGSLFTAPERVEEWSKQANTQNRVWRSSAFGRPVVEPLKETEIEQTFVAVKPLVDVKEDEEGENSFKVLRQAVKEYWAIMKEYYKAAVEAYSKGDQERAFKLMKEGQFYNMKAREADEKSAQKLLETSDEEMLLDLSTHQPKEAVKILKLHLSNLAGIPSRPLVIAFCFDYRYTFSQGHRGK*

Click here to download the sequence:
Link to NCBI Protein BLAST