Transcript Information: S_Transcript_151549.p1


Annotated TAIR IDAT3G15390.1
Annotated Gene Namesilencing defective 5
Annotated Gene Symbol(s)SDE5
Annotation TypeHomolog
Chromosome Positionchr3:5196689-5199531 | Reverse length=490
E-Value2E-49
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 11.5556660429751
Replicate 21.6581637245731
Replicate 31.1550774165094
Condition 2: 8 Hour
Replicate 11.2020574917799
Replicate 22.0550341130438
Replicate 32.5365413642671
Condition 3: 24 Hour
Replicate 10.36484147792224
Replicate 20.89898208757954
Replicate 31.5796687518862


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_151549.p1 GENE.S_Transcript_151549~~S_Transcript_151549.p1 ORF type:internal len:479 (+),score=123.62,DUF1771|PF08590.6|1.8e-13 S_Transcript_151549:1-1434(+)
CTCACCTTCACTCCTCCACCCGCTGCTACTTTGATCCTCACTCCTCCGCCTTTTGGCAACATTTCTCTCTCCTCTATTCTACTACTATATATATACACTCACCCTTTCCATTTTCTCTCTCATTTTCCTTCTCCAAGAAGCCTCCTTTCACTCTCGCCATTCTTCTCTCAATATCTTGTCATGGAAACAGTTAGACCGTGCAGTTCATCTCTCGGGGATGTCAATAGGGATATTGAGCTGCTGCTTGAAGCTTTTGGATCAGCTTTTTCACTTGAGGCCATAACCTCTGCTTACTCCCAGGCGAGGCGCAACGTGGAGTTGGCCGGTGTGATTCTTTATGACTTGCAAGGAGATACTTCTGCATCAATGACAAGTGGATCCAAACATGGACAGGTTGCAGGCACCTCACTATCATCAGTGTCATCTTCAGAAGATGCTTCACAGCATCAGTTCTCTGCAGATGGACATGGTACAAGCCTTGGGCCAAGCAACATTGTTTCCAGGGCCCCTCGAGTGGAAAAGTCAAGCACGAGACAGTCAGCAAATGGATCTATGAAAAGTCAGCCATCTGAGGAATCACTTGCTATCTCATGCGGCAGTAGTGGGAAGGATAGCAATAACATGCCTAAAGACATTGGAGATTTTTTGTTCAAAATGCTTGGAGAAGGTTTTCAACTTGACCAGAAAGTGATCCATAAAGTTCTTGGCCTCTGTGGATATGATCTGGAAAAGAGTATGGAAACACTTGTTGACCTATCAGCTTCAAGCCTTGAAAAGAGTGATGATGTTGTGAGCACAAGCCTGACTACTGACAGTGAGCTGTATCTAAAGATTGGCCTGCCTCCGTGTCCCGAGAGATCACAGTTTCCCGATTCTTCTCCGAGGTCTGGGAACCAAAATGGGAAACAATCACGTAGGAGAAACAAAGATCAGGGTGATCTGCAGAGGGAAATTTTGGGGTCTTTGTTCACTGCTCCTGAAAGAGTAGAGGAGTGGTCCAAACAAGCAAATACTCAAAATAGAGTCTGGAGATCAAGTGCATTTGGAAGACCTGTTGTTGAACCTCTGAAAGAGACTGAAATAGAGCAGACATTTGTTGCAGTGAAACCGCTAGTAGATGTCAAAGAAGATGAAGAGGGTGAAAACAGCTTCAAAGTCCTTCGCCAAGCTGTCAAGGAGTACTGGGCTATTATGAAGGAATACTACAAAGCTGCTGTTGAGGCATATTCTAAGGGAGATCAAGAGCGAGCTTTCAAACTTATGAAAGAGGGTCAATTTTATAACATGAAGGCTCGAGAAGCTGACGAAAAGTCCGCACAAAAGCTTTTGGAAACAAGTGATGAGGAAATGTTGCTTGATTTGAGTACCCATCAACCAAAGGAAGCAGTTAAAATCCTGAAGCTTCATCTATCTAATCTTGCTGGCATCCCAAGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_151549.p1 GENE.S_Transcript_151549~~S_Transcript_151549.p1 ORF type:internal len:479 (+),score=123.62,DUF1771|PF08590.6|1.8e-13 S_Transcript_151549:1-1434(+)
LTFTPPPAATLILTPPPFGNISLSSILLLYIYTHPFHFLSHFPSPRSLLSLSPFFSQYLVMETVRPCSSSLGDVNRDIELLLEAFGSAFSLEAITSAYSQARRNVELAGVILYDLQGDTSASMTSGSKHGQVAGTSLSSVSSSEDASQHQFSADGHGTSLGPSNIVSRAPRVEKSSTRQSANGSMKSQPSEESLAISCGSSGKDSNNMPKDIGDFLFKMLGEGFQLDQKVIHKVLGLCGYDLEKSMETLVDLSASSLEKSDDVVSTSLTTDSELYLKIGLPPCPERSQFPDSSPRSGNQNGKQSRRRNKDQGDLQREILGSLFTAPERVEEWSKQANTQNRVWRSSAFGRPVVEPLKETEIEQTFVAVKPLVDVKEDEEGENSFKVLRQAVKEYWAIMKEYYKAAVEAYSKGDQERAFKLMKEGQFYNMKAREADEKSAQKLLETSDEEMLLDLSTHQPKEAVKILKLHLSNLAGIPS

Click here to download the sequence:
Link to NCBI Protein BLAST