Transcript Information: S_Transcript_15260.p3


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-07
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.8881022676862
Replicate 28.4048722123866
Replicate 37.025804222324
Condition 2: 8 Hour
Replicate 15.802827297179
Replicate 25.4788200750351
Replicate 36.162745055862
Condition 3: 24 Hour
Replicate 17.8017441037836
Replicate 24.7794432575971
Replicate 37.6352447348821


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_15260.p3 GENE.S_Transcript_15260~~S_Transcript_15260.p3 ORF type:complete len:294 (+),score=49.91,UBN2|PF14223.2|5e-21,UBN2_3|PF14244.2|2.1e-16,UBN2_2|PF14227.2|7e-12,Retrotrans_gag|PF03732.13|9e-07 S_Transcript_15260:515-1396(+)
ATGGCCAACCCCAACTCGTCATATCAAATTCCCAACCCCACTGATCCTTCCAAGCCTTTCACCTTTATCAATATTAACAATGCCATCAAACTTACTTCTAATAATTATCTATCATGGAAAATGCAACTTTCCGCTATTCTTATTGGTCATGATCTTTATTGTTTTGTTGATGGCTCCTGTCCAGCCCCTTCTCCCACCATTACTGCAGATGGTGTTGAGAAATCTAACCCAGCTCATGCATTCTGGCTTCGCCAAGACAAATTACTGTTCGGTGCTCTTGTTGGTACTCTCTCTTCCCCTCTTCTTCCTCTTGTTTCTCAGGCTCAAACCACAAAAGATGTCTGGGATATTCTGGCTAAGACATATGCAAAACCCAGCCGTGGGCATATTAAACAATTGAAGGATCAATTTCACAAAATCTCCAAAGGCCCACGATCAATAACTGAATACATGCAAGCCCTCAAAGCTTGTGCTGATCAATTGGCTGCTCTTGGCAAACCAATTGATCATGAAGACCTTATTGATCAAGTTCTTTCTGGTCTTGACAACTCCTACAGTATCATTGTTGAGGCAGTCAATGGACGAGACATAACTATATCCTTTGAAGAGCTTCATGAAAAACTCATTAATAAGGAACTCTCTCTACAACAAAATCAGCCTAATGCATCATTTCCTGCTACTGCTTTTGTTGCTCACTCTCGTCCACAAAATCGTCCAAATACCCGAACCTCTTCTCAGGGTATTCTTCCAATACCTTCTACAAACACACAACCTAGACAATCTAAACCATATCTTGGCAAGTGTCAATGGTGTCGTGAACAAGGTCATACTGTATCCAAATGTGCTGATTTTCTTCGCCGTTCCCGAATGCTAATCAACTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_15260.p3 GENE.S_Transcript_15260~~S_Transcript_15260.p3 ORF type:complete len:294 (+),score=49.91,UBN2|PF14223.2|5e-21,UBN2_3|PF14244.2|2.1e-16,UBN2_2|PF14227.2|7e-12,Retrotrans_gag|PF03732.13|9e-07 S_Transcript_15260:515-1396(+)
MANPNSSYQIPNPTDPSKPFTFININNAIKLTSNNYLSWKMQLSAILIGHDLYCFVDGSCPAPSPTITADGVEKSNPAHAFWLRQDKLLFGALVGTLSSPLLPLVSQAQTTKDVWDILAKTYAKPSRGHIKQLKDQFHKISKGPRSITEYMQALKACADQLAALGKPIDHEDLIDQVLSGLDNSYSIIVEAVNGRDITISFEELHEKLINKELSLQQNQPNASFPATAFVAHSRPQNRPNTRTSSQGILPIPSTNTQPRQSKPYLGKCQWCREQGHTVSKCADFLRRSRMLIN*

Click here to download the sequence:
Link to NCBI Protein BLAST