Transcript Information: S_Transcript_152757.p1


Annotated TAIR IDAT5G08490.1
Annotated Gene NameTetratricopeptide repeat (TPR)-like superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:2745208-2747757 | Reverse length=849
E-Value7.6E-180
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.24550739146845
Replicate 20.20353126898076
Replicate 30.44235344849964
Condition 2: 8 Hour
Replicate 10.47214886310996
Replicate 21.0319118376258
Replicate 30.98320330281279
Condition 3: 24 Hour
Replicate 10.56425898315188
Replicate 20.16726060203946
Replicate 30.51188651006693


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_152757.p1 GENE.S_Transcript_152757~~S_Transcript_152757.p1 ORF type:3prime_partial len:542 (+),score=64.93,PPR_2|PF13041.2|9e-07,PPR_2|PF13041.2|0.0095,PPR_2|PF13041.2|3.1e-07,PPR_2|PF13041.2|0.79,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|13,PPR_2|PF13041.2|4.3e-05,PPR_2|PF13041.2|9.1,PPR_2|PF13041.2|1.3e-05,PPR_2|PF13041.2|11,PPR|PF01535.16|0.00058,PPR|PF01535.16|0.006,PPR|PF01535.16|0.00059,PPR|PF01535.16|0.67,PPR|PF01535.16|0.022,PPR|PF01535.16|5.9e+03,PPR|PF01535.16|0.28,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.68,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|0.55,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|0.92,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|4.5e+02,PPR_1|PF12854.3|0.62,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|95,PPR_1|PF12854.3|0.057,PPR_1|PF12854.3|0.15,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|81,PPR_3|PF13812.2|53,PPR_3|PF13812.2|7e+02,PPR_3|PF13812.2|28,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|28,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|60,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|60 S_Transcript_152757:964-2586(+)
ATGTATGCTAAATGTGGAGTGGTCCATGATGATGCATATGCATCTTTTTTTGAGATTTTTGACAAAGATGTAGTGTCATGGAATGCAATAATCGCTGGGCTTGCAGAGAACGGGTTCTATATGGATGCTTATGCACTGTTTCGACATATGTTACTAGGGCCTGTTACACCAAATTATGCTACCATTGCAAGTATTCTACCTGTATTTGCTACTTTAGATAGGGATACTGCTTACTGTTTGAGTAGAGAATTGCATGCTTACACTGTTAAGGAGATTGAGTTACAAGAAAACATATATGTCATTAATGCACTCATGAGTTTTTACTCGAGGATAGGTCTGTTAGAAGATGCAGAAGTTCTGTTTAAAGGAATGTCATCAAGGGATGTTGTTTCATGGAATGTCATTATTGGTGGCTGTGTGTCACTCAATGAATATTCTAAAGCAATCCGCTTGTTTTATGAACTGGTTTCTGAGAGGACACTAGAACCAAATTCAGTAACTCTGATTACCGTCCTACCTGCTTGTGCCCATCTGCATAGTTTACAGATGATAAAGCAGATTCATTGGTATATCTTCCAGCATCCAGTTTTATATAATGATACAGCAGTCAGTAATGCCCTGATAAGTTCCTATGTTAAATGTGATGATTTAGATTCTTCATTTAGGACATTCATGAAGATATCTCATAGAGATTTGATCACTTGGAATTCAATTATTGATGCCTTTTCAGGGAGTGGCTGTGAGTCGCAGTTGGTTGATCTCTTACACCAGATGTTTAAAGAGGGGTTTGGACCTGATTCCGTCACTGTTTTAACTCTGATTCGATTTTATGCCAGTGTTTGTAAATTATCCAAGGTTAAAGCAGCTCATGGCTATTTATTACGGGCATGTCTTAGTAAAAGTAGTACTCAACCTCCTCTAAGTGAAGCTTTACTTGATGCATATGCTAGATGTGGCAGAGTTGATTACGCACATAAGATTTTTGGGATTATTTTGGGTGAAATGATCCCATTGGGTGATTCTATAAAACCAGGTTATTTGACTCATAGTTTACAGGGAGCCTATAAAACTTCAGTGGATATGTCTCAAACATATCTCCCAACTTGGAATTTGATGATACGTGCCTATGTGCGAAACAACTGTTATGAAGGGGCTGTGAGTTTGTTGCTTGAATTACAAGGTCTAGGTATGAAACCGGATGCAGCAACCATTATGAGCATACTTCTCATGTGTGCTAAAATGGCCTCAGTCCAATTGCTAAGGCAATGCCATGGGTATGTGGTTCGGGCTTGTATTGAGGATATTCAATTGAAGGGGACTCTAATAGATGCATATTCAAAATGTGGCAGTGTAAGCATAGCTGATAGGCTTTTTATGTCAAGTACCCAGAAGGACCTAGTTATGCATACATCTCTGATTGGTGGGTATGCGATGAATGGTATGGGGAAGGAAGCAATTGTCGTGTTCAAGAACATGGCTGAGTTGGGCATTAGGCCAGATCATGTTGTTCTGACAACCATTTTATTTGCCTGTGGTCATGCTGGTCTTGTGGACGAGGGTTTGAAAATTTTTTATTCCATAGAAAATGTCCATAAAATGAAACCTACCATGGAACAATATTGT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_152757.p1 GENE.S_Transcript_152757~~S_Transcript_152757.p1 ORF type:3prime_partial len:542 (+),score=64.93,PPR_2|PF13041.2|9e-07,PPR_2|PF13041.2|0.0095,PPR_2|PF13041.2|3.1e-07,PPR_2|PF13041.2|0.79,PPR_2|PF13041.2|1.8e-05,PPR_2|PF13041.2|13,PPR_2|PF13041.2|4.3e-05,PPR_2|PF13041.2|9.1,PPR_2|PF13041.2|1.3e-05,PPR_2|PF13041.2|11,PPR|PF01535.16|0.00058,PPR|PF01535.16|0.006,PPR|PF01535.16|0.00059,PPR|PF01535.16|0.67,PPR|PF01535.16|0.022,PPR|PF01535.16|5.9e+03,PPR|PF01535.16|0.28,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|0.68,PPR|PF01535.16|1.9e-05,PPR|PF01535.16|0.55,PPR_1|PF12854.3|0.00012,PPR_1|PF12854.3|0.92,PPR_1|PF12854.3|5.1,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|3.1,PPR_1|PF12854.3|4.5e+02,PPR_1|PF12854.3|0.62,PPR_1|PF12854.3|1.7e+02,PPR_1|PF12854.3|95,PPR_1|PF12854.3|0.057,PPR_1|PF12854.3|0.15,PPR_3|PF13812.2|0.68,PPR_3|PF13812.2|81,PPR_3|PF13812.2|53,PPR_3|PF13812.2|7e+02,PPR_3|PF13812.2|28,PPR_3|PF13812.2|5.4,PPR_3|PF13812.2|28,PPR_3|PF13812.2|1e+03,PPR_3|PF13812.2|60,PPR_3|PF13812.2|2.3,PPR_3|PF13812.2|60 S_Transcript_152757:964-2586(+)
MYAKCGVVHDDAYASFFEIFDKDVVSWNAIIAGLAENGFYMDAYALFRHMLLGPVTPNYATIASILPVFATLDRDTAYCLSRELHAYTVKEIELQENIYVINALMSFYSRIGLLEDAEVLFKGMSSRDVVSWNVIIGGCVSLNEYSKAIRLFYELVSERTLEPNSVTLITVLPACAHLHSLQMIKQIHWYIFQHPVLYNDTAVSNALISSYVKCDDLDSSFRTFMKISHRDLITWNSIIDAFSGSGCESQLVDLLHQMFKEGFGPDSVTVLTLIRFYASVCKLSKVKAAHGYLLRACLSKSSTQPPLSEALLDAYARCGRVDYAHKIFGIILGEMIPLGDSIKPGYLTHSLQGAYKTSVDMSQTYLPTWNLMIRAYVRNNCYEGAVSLLLELQGLGMKPDAATIMSILLMCAKMASVQLLRQCHGYVVRACIEDIQLKGTLIDAYSKCGSVSIADRLFMSSTQKDLVMHTSLIGGYAMNGMGKEAIVVFKNMAELGIRPDHVVLTTILFACGHAGLVDEGLKIFYSIENVHKMKPTMEQYC

Click here to download the sequence:
Link to NCBI Protein BLAST