Transcript Information: S_Transcript_152978.p1


Annotated TAIR IDAT3G09040.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:2761195-2764281 | Reverse length=1028
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.72239417033606
Replicate 20.71865764030993
Replicate 30.68083933424801
Condition 2: 8 Hour
Replicate 11.7829045107701
Replicate 22.2104649578883
Replicate 32.3607127640696
Condition 3: 24 Hour
Replicate 10.66412240796595
Replicate 20.66441141429031
Replicate 30.98587795720324


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_152978.p1 GENE.S_Transcript_152978~~S_Transcript_152978.p1 ORF type:complete len:921 (+),score=171.92,PPR_2|PF13041.2|6.9e+02,PPR_2|PF13041.2|8.8e-06,PPR_2|PF13041.2|34,PPR_2|PF13041.2|1.7e-12,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|5.7e-07,PPR_2|PF13041.2|25,PPR_2|PF13041.2|6.1e-09,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|9.2e-05,PPR_2|PF13041.2|4.9,PPR_2|PF13041.2|1.8e-06,PPR_2|PF13041.2|1.9e+03,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|11,PPR_2|PF13041.2|2.9e-10,PPR_2|PF13041.2|25,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|1e+03,PPR|PF01535.16|7.1,PPR|PF01535.16|0.058,PPR|PF01535.16|7.5,PPR|PF01535.16|5.4e-10,PPR|PF01535.16|0.15,PPR|PF01535.16|0.0021,PPR|PF01535.16|0.13,PPR|PF01535.16|0.0024,PPR|PF01535.16|1e+02,PPR|PF01535.16|0.0021,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.031,PPR|PF01535.16|7.1,PPR|PF01535.16|9e+02,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.085,PPR|PF01535.16|3.5e-07,PPR|PF01535.16|6.5,PPR|PF01535.16|0.25,PPR|PF01535.16|7.2,PPR_1|PF12854.3|6.6e+02,PPR_1|PF12854.3|3.6e+02,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|0.0048,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|97,PPR_1|PF12854.3|0.041,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|43,PPR_1|PF12854.3|9e+02,PPR_1|PF12854.3|3.6e+02,PPR_1|PF12854.3|14,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|1.1e-05,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|2.7e+02,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|40,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|16,PPR_3|PF13812.2|18,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|5.3e+02,PPR_3|PF13812.2|0.43,PPR_3|PF13812.2|0.87,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|6.5e+03,PPR_3|PF13812.2|8.4e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|8.5e+02,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0008,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|5,TPR_19|PF14559.2|0.19,TPR_19|PF14559.2|2.1e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|1.3e+03,TPR_19|PF14559.2|1.6e+02 S_Transcript_152978:505-3267(+)
ATGCCTCAGAGAATATCCCAGGCTTATAATGCTGGTAAAGCCATCCACGCACGTAGTTTGAGGTTTGGGTTAGGTGGGCAGTTGGGAAATTCAATCCTTGATTTGTATGCTAAGTGTGGCAATGTTGGATACTCTAAGAGGGTTTTTGATATGTTGGATGATAGGGATGTACAAGCTTGGAACTCCTTCATGTCTATGTATTTGAGACTTGGGTTGTTAAATAATGTTGTGAGGTCATTTGGGTCGATGAGAGATTCGGGTGTTGCTGCGAATCAGTTCAGTTATGCTATGGTATTGTCGGCTTCTAGTAGGTTGATGGATGTTGGTCTTGGGAAACAAGTACATAGTGATGCTGTTAAGATGGGTTATATTTGTAGTTCCTTTTGTGAAAGTTCTCTGATTGATATGTATGTTAAATGCAATGCGTTAGGCGATGCAAGGAAACTTTTTAGATTAGTAGATGACCCAAGTTTAGTTTCTTGGACTGCAATGATTATGGGGTATGTTCAGAATGGTTTAATTGATGAGGCACTCAAATTATTTGAGAGTATGCAAAAGTCGGGTAGTGCTCCTGATCATGTTGCTTTCGTGACTATGATTGGTGCATTTGTTAATGCCGGGAGGCTGAATGAAGCTAGGAACTTGTTTGTTCAAGTGCCTGTTCCTAATGCGGTAGCATGGAATTTGATGATCTCGGGGCATGGTAAACGAGGTTATCAAGCAGAGGCGATTTCGTTCTTTCTGAATATGAGAAAAGCTGGTGTGTCATCAACTCGATCCACATTGGGAAGTGTTCTAAGTGCCACTGCCAGTTTGAAGGCTTTTGATATTGGCTTGGCAGTTCATGCTCAGGCAATCAAGCAAGGGCTAGATAGGAATGTCTATGTGGGGAGTTCCTTGATTAATATGTATGCAAAATGTCTGAAGCCAGAGTTGGCAAGGCAAGTTTTTGACTCATTGGGTGAGAAAAACATTGTCCTATGGAATGCAATGCTTGGGGGCTATGCACAGAATGATTATGCTCATGAGGTGGTTAAATTGTTCTTTGACTTTAGAAATAGTGGCTCCCAGGCTGATGAATTTACTTATACCAGCATTTTGAGTGCATGTGCCTGCTTGGATAGATTATGTCTGGGAAGCCAATTGCATACTGTTATAATCAAGACCAATTTTGCATCAAACTTGTTTGTAAGTAATGCATTAGTTGATATGTATGCAAAGTCTGGTGCTTTATCTGAAGCAAGGCAACTATTTGAGAATATGGTCGATAGAGATAATGTTTCTTGGAATGCAATCATCGTTGGTCATGTTCAGGAAGGAGAGGAGGATGAGGCTTTTGGCCTCTTTCAGAGAATGATGTCTGACGTTACTACAGCTGATGAAGTCGCTTTGGCTAGTATACTCAGTGCTTGTGCAAATTCGAAAGATCTTACTCGAGGACAACAAATCCATTGCCTATCTGTAAAACATGGCTTAGAGACAAATCTTTATGCAGGAAGCTCTCTTATTGACATGTATGTCAAGTGTGGGTTCATCACAGCTGCATGTGAGGTTTTCTATCGCATGCCTAATTGGAGTGTGGTTTCAGTAAACGCTTTAATTGCTGGTCATGCACAGGACAATTCAGAAGAAGCAGTAAACCTATATAAGCTTATGCTTGGTGAAGGATTATGTCCATCTGAAATCACTTTTGCTAATCTTTTAGATGCATGTCACGAGCCTTCCAATTTTCATTTGGGGTTACAAATCCACTCTATTGTATTAAAGAAAGGGCTTCTGTATCATGATGGGTTCTTGGGTGTTTCTTTACTGGGAATGTATATGGATTCTCTCAAGAAGGAAGATGCAGTAAAACTTTTCTTTGAGTTCCCAGATTGGAATAGTACAATACTATGGACATGTATGATTTCAGGTCTGAATCATAATGAGTGCCATGAGGAGGCTTTTCAACTATATTGCAAAATGCGTAGTTATGATGTTATGCCAGACCAAGCAACATATGCAAGCATACTGAAAGCATGCTCCACTTTAGCTTGTTTCAGGGAGGGGATCAAGATCCATGCATTTGTTTTCCGTACTGGCTTCAATGTAGATGTGTTAGTGGGCAGTGCTCTTATAGATATGTACGCCAAATGTGGAGATGTGAAAAGTTCTGTACAGGTTTTTAAGGAAATTGGTCATACGTGGGATGTTGTAGCATGGAACTCGATGATAGTGGGCCTAGCTAAAAATGGTTATGTAGAAGATGCTCTAAAGATATTTGAACTAATGATGCAGTCACTGGTAGATCCTGATGATGTCACATTTCTTGGGGCCCTTAGTGCTTGTAGTCATGCAGGTAAAATATCTGAAGGCCGTCATATCTATGACATTATGGTAAAGGAGTGTGGGATTCAGCCGAGAAGTGATCACTCTGCATGCATGATTGATCTTTTTGGCCGATGGGGCTTGCTTGAGGAAGCAGAGAGTTTTATTGATAAACTGAACTTTGAGCCAGACGCTATGATCTGGGCGTCATATCTTGGAGCCTGCAAACTGCATGAGGACAATGAAAGAGGGAAGTATGCAGCTGAGAAACTGATAGCTTTGGAACCTCATAATTCTTCAGCATACATTTTGCTTTCAAGTATACATGCTTCCTCAGGCAATTGGAAGGAAGTTGACCTTTTGAGGAGGCAAATGATAGAAAACGGAGTCGAAAAATTTCCAGGATCTAGCTGGCTTAGTAGAACAGAAAAGCAAAGTGGCCAGTTCTTGCTATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_152978.p1 GENE.S_Transcript_152978~~S_Transcript_152978.p1 ORF type:complete len:921 (+),score=171.92,PPR_2|PF13041.2|6.9e+02,PPR_2|PF13041.2|8.8e-06,PPR_2|PF13041.2|34,PPR_2|PF13041.2|1.7e-12,PPR_2|PF13041.2|0.12,PPR_2|PF13041.2|5.7e-07,PPR_2|PF13041.2|25,PPR_2|PF13041.2|6.1e-09,PPR_2|PF13041.2|0.0015,PPR_2|PF13041.2|9.2e-05,PPR_2|PF13041.2|4.9,PPR_2|PF13041.2|1.8e-06,PPR_2|PF13041.2|1.9e+03,PPR_2|PF13041.2|1.7e-09,PPR_2|PF13041.2|11,PPR_2|PF13041.2|2.9e-10,PPR_2|PF13041.2|25,PPR_2|PF13041.2|4.2e+02,PPR_2|PF13041.2|1e+03,PPR|PF01535.16|7.1,PPR|PF01535.16|0.058,PPR|PF01535.16|7.5,PPR|PF01535.16|5.4e-10,PPR|PF01535.16|0.15,PPR|PF01535.16|0.0021,PPR|PF01535.16|0.13,PPR|PF01535.16|0.0024,PPR|PF01535.16|1e+02,PPR|PF01535.16|0.0021,PPR|PF01535.16|3.6e-05,PPR|PF01535.16|1.6e+04,PPR|PF01535.16|0.031,PPR|PF01535.16|7.1,PPR|PF01535.16|9e+02,PPR|PF01535.16|0.00014,PPR|PF01535.16|0.085,PPR|PF01535.16|3.5e-07,PPR|PF01535.16|6.5,PPR|PF01535.16|0.25,PPR|PF01535.16|7.2,PPR_1|PF12854.3|6.6e+02,PPR_1|PF12854.3|3.6e+02,PPR_1|PF12854.3|1.4e-05,PPR_1|PF12854.3|0.026,PPR_1|PF12854.3|0.0048,PPR_1|PF12854.3|1.2e+03,PPR_1|PF12854.3|2.9e+02,PPR_1|PF12854.3|97,PPR_1|PF12854.3|0.041,PPR_1|PF12854.3|0.017,PPR_1|PF12854.3|43,PPR_1|PF12854.3|9e+02,PPR_1|PF12854.3|3.6e+02,PPR_1|PF12854.3|14,PPR_1|PF12854.3|1.3e+03,PPR_1|PF12854.3|2.6,PPR_1|PF12854.3|1.1e-05,PPR_1|PF12854.3|7.1e+03,PPR_1|PF12854.3|2.7e+02,PPR_3|PF13812.2|5.8e+02,PPR_3|PF13812.2|40,PPR_3|PF13812.2|1.5e+03,PPR_3|PF13812.2|0.023,PPR_3|PF13812.2|16,PPR_3|PF13812.2|18,PPR_3|PF13812.2|2.8,PPR_3|PF13812.2|1.7e+03,PPR_3|PF13812.2|5.3e+02,PPR_3|PF13812.2|0.43,PPR_3|PF13812.2|0.87,PPR_3|PF13812.2|2e+03,PPR_3|PF13812.2|6.2,PPR_3|PF13812.2|6.5e+03,PPR_3|PF13812.2|8.4e+03,PPR_3|PF13812.2|1.9e+02,PPR_3|PF13812.2|8.5e+02,PPR_3|PF13812.2|14,PPR_3|PF13812.2|0.0008,PPR_3|PF13812.2|1.7e+02,PPR_3|PF13812.2|1.5e+04,PPR_3|PF13812.2|5,TPR_19|PF14559.2|0.19,TPR_19|PF14559.2|2.1e+02,TPR_19|PF14559.2|1.1e+03,TPR_19|PF14559.2|1.3e+03,TPR_19|PF14559.2|1.6e+02 S_Transcript_152978:505-3267(+)
MPQRISQAYNAGKAIHARSLRFGLGGQLGNSILDLYAKCGNVGYSKRVFDMLDDRDVQAWNSFMSMYLRLGLLNNVVRSFGSMRDSGVAANQFSYAMVLSASSRLMDVGLGKQVHSDAVKMGYICSSFCESSLIDMYVKCNALGDARKLFRLVDDPSLVSWTAMIMGYVQNGLIDEALKLFESMQKSGSAPDHVAFVTMIGAFVNAGRLNEARNLFVQVPVPNAVAWNLMISGHGKRGYQAEAISFFLNMRKAGVSSTRSTLGSVLSATASLKAFDIGLAVHAQAIKQGLDRNVYVGSSLINMYAKCLKPELARQVFDSLGEKNIVLWNAMLGGYAQNDYAHEVVKLFFDFRNSGSQADEFTYTSILSACACLDRLCLGSQLHTVIIKTNFASNLFVSNALVDMYAKSGALSEARQLFENMVDRDNVSWNAIIVGHVQEGEEDEAFGLFQRMMSDVTTADEVALASILSACANSKDLTRGQQIHCLSVKHGLETNLYAGSSLIDMYVKCGFITAACEVFYRMPNWSVVSVNALIAGHAQDNSEEAVNLYKLMLGEGLCPSEITFANLLDACHEPSNFHLGLQIHSIVLKKGLLYHDGFLGVSLLGMYMDSLKKEDAVKLFFEFPDWNSTILWTCMISGLNHNECHEEAFQLYCKMRSYDVMPDQATYASILKACSTLACFREGIKIHAFVFRTGFNVDVLVGSALIDMYAKCGDVKSSVQVFKEIGHTWDVVAWNSMIVGLAKNGYVEDALKIFELMMQSLVDPDDVTFLGALSACSHAGKISEGRHIYDIMVKECGIQPRSDHSACMIDLFGRWGLLEEAESFIDKLNFEPDAMIWASYLGACKLHEDNERGKYAAEKLIALEPHNSSAYILLSSIHASSGNWKEVDLLRRQMIENGVEKFPGSSWLSRTEKQSGQFLL*

Click here to download the sequence:
Link to NCBI Protein BLAST