Transcript Information: S_Transcript_1536.p1


Annotated TAIR IDAT4G19490.1
Annotated Gene NameVPS54
Annotated Gene Symbol(s)ATVPS54, VPS54
Annotation TypeOrtholog
Chromosome Positionchr4:10616017-10622934 | Forward length=1034
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 110.423910768265
Replicate 213.324573124451
Replicate 313.297333784565
Condition 2: 8 Hour
Replicate 114.022494070675
Replicate 212.899304412621
Replicate 312.360393031335
Condition 3: 24 Hour
Replicate 114.555288890341
Replicate 215.051349701141
Replicate 312.721403140874


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_1536.p1 GENE.S_Transcript_1536~~S_Transcript_1536.p1 ORF type:3prime_partial len:914 (+),score=182.04,Vps54|PF07928.8|1.6e-46,DUF2450|PF10475.5|3e-07 S_Transcript_1536:104-2842(+)
ATGGATTCACGGCCTTCCCTATCGGGAAGGTACAACGTCGAATCACCGACAACGAGCACTTCATCTCCATCGTCAATATCAAGGACGAACTCCTTAGCATCGTATTCGCATTCTCAATCGAGTAAGTCACTTTTCGAACACAACCTCTCTTCGATTCTCAACAACCCTCACTCTTCTCGATCCGGCACCGATCCTACCTCCTGGCTTGGCTGGTGGTCTTCTTCTTCTGCCGTAACCCTACCCGAATTCGCTCCCATTAACACCTCCAAACCCGAACTCGACTCCACCCGCTCCGATTTCCAACCTTACTTATCTTCCATCTCTGAACACTACAACCGTTTCGAGGACATCCGGAACCACTCCATTAAAGAAGAACAAAACCTCGTCGTCGATGGTGACACCGATAACGAGGTCGGTGGTGGTGGCCAAGGTGAGGCACTAGTGGCTTGTTTAAGAGAAGTACCGGCATTGTACTTTAAGGAGGATTTTGAGCTAGAAGATGGAGCTAACTTCAAAGCGGCGTGTCCGTTTTCGACCATGAACGAGAATTTGGTCCTTCAAGAACGGTTGTCGCAGTACTTGGATGTGGTTGAGATGCATTTGGTGAAGGAGATTTCGTTGCGGTCGAATTCGTTCTTCGAGGCTCAACAACAGTTAGGGGATTTGAATGTTAAGATTGTGGATGGTTGTAAGAGGATTAGAGAACTGAAGGAGACTATTAGGCTTTTGGATAATGATATTGTTGGCTCTGCTAGACAGATTCAAGAATTTAGTTCTATGAGGAATAACTTGTTGGCTCTTCAACAGAAGTTGCGGCTTATCTTGTATGTTAATCAGGCTCTCTCCGCCCTCAAACTGCTCGTACAATCTGCTGATTGTGCAGGAGCACTGGATGTTATTGACGATTTGCAGCATTTGCTGGATGGTGACGAGCTGACAGGTCTGCACTGCTTTCGTCATCTTCGTGACCATGTTGCTGCATCAATGGAATCCATAAACAGCATTCTTTCGGCAGAATTTATGCGTGCGTCTTTACATGATGCTGCGGATGTGGATGCTGTAATTGTATCAAAAGCGAAAGAAAGAGCATCTGCACCCAGTAATGGAAGACTTGATGATGTGAAGTTGGATGAAGAAGAAATCTCTAACTACCGAGATCGTCTTCTGCCAATAATAATTGGATTGCTTAGAACAGCAAAACTACCATCAGTCCTGAGGATATATCGTGATACACTTACTGCTGATATGAAAACGGCTATAAAAACTGGAGTAGCAGAGCTGCTTCCAGTTCTGGTTGCTCGACCACTGGAGTCGGATTTCTCGACAGGAGAGAGGACCAGTGATGCAGATGGTGGAGGCTTGTCTCTTGCAAGCAGGCTGAGGAATTTACCATCTGAAAGCTTCGTTCAATTATTAGCTGCTATTTTCAAGATTGTCCTGGCTCATTTAGTTCGGGCAGCTGAAATCAAAAAGTCCATTGAGTGGATCATGTCTAATCTGGATGGTCATTATGCAGCTGAGTCAGTGGCTGCTGCCATTGCACTTGGTGCTGCCGCTGCAGAAACTGTTCAAGATAGTGATAGTCAAGGCAACTATGTGGTTGCACATTCTCCACAAAGGATTATTGCCAAATCTCCTTCTTTCCAAGGGAAGGCAAATGAAGCAACAAGTCCTTCAAATATGTCAAAAAATTTCCGCGCTGATGTGTTACGAGAAAACGCTGAAGCTGTCTTTGCAGCTTGTGATGCTGCCCATGGGAGGTGGGCAAAACTTCTTAGTGTTCGTGCTCTTCTTCATCCCAAGTTAAGGTTACAGGAGTTTCTAAGCATTTACAGCATCAGTCAAGATTTTATAAATGTTACTCAAAAGACTGGTGGAAGGTTGGGATTTAGTATACGGGGTACACTGCAGTCACAAGCCAAAGCCTTTGTGGATTACCAGCATGAGTCACGTGTCACAAAAATTAAGGCAGTGTTAGATCAAGAAACCTGGTCAGAAGTTGATGTTCCGGATGAGTTTCAGGCCATTGTTGCTTCAATGCTTACTTCTGATCCTCTGGTTGCTGGGAACTCTGAGGTTTCTCAGGGTAGTGAAGTAATATCAAGCAATGGAGAGGCCGCTGTGGCTGACATCAAAGAAGAGAATCCTGAGCATTCTGCAGGACAAACTGATTCCAGCAACAGTTTTAATGATACTGCCACCCAAGAGATATCTCAACATTCGGGTCAGGCAACTAACATTAATAAAGTTGATGTTGCTACTTCAACCAACAGCAAAAACAGTAGCATAAAAGATCGGGGAAAGACAGCTTCTCAAACTCTCATGCATAGAGGGGTTAACTATCACATGGTTAACTGTGGCTTAATATTGCTGAAGATGCTTTCAGAGTACATTGATATGAACGATAGCTTGCCAGCACTTTCATCAGAAGTTGTTCACCGTGTCGTAGAAATTTTGAAGTTCTTCAATACCAGAACTTGTCAGCTGGTACTTGGGGCTGGTGCCATGCAGGTGTCTGGCTTGAAATCCATCACATCTAAGCATTTGGCATTGGCGAGTCAAGTTATCAGTTTTGTATATGCTATTATTCCTGACATCCGAAGGATCCTCTTTCTCAAAGTACCCGACGCTAGAAGAGCATTGTTACAATCAGAGATTGATCAGGTTGCACAGGATTATAAGGTTCACCGAGATGAGATACATACAAAGCTGGTTCAGATTATGAAAGAGAGGTTAATG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_1536.p1 GENE.S_Transcript_1536~~S_Transcript_1536.p1 ORF type:3prime_partial len:914 (+),score=182.04,Vps54|PF07928.8|1.6e-46,DUF2450|PF10475.5|3e-07 S_Transcript_1536:104-2842(+)
MDSRPSLSGRYNVESPTTSTSSPSSISRTNSLASYSHSQSSKSLFEHNLSSILNNPHSSRSGTDPTSWLGWWSSSSAVTLPEFAPINTSKPELDSTRSDFQPYLSSISEHYNRFEDIRNHSIKEEQNLVVDGDTDNEVGGGGQGEALVACLREVPALYFKEDFELEDGANFKAACPFSTMNENLVLQERLSQYLDVVEMHLVKEISLRSNSFFEAQQQLGDLNVKIVDGCKRIRELKETIRLLDNDIVGSARQIQEFSSMRNNLLALQQKLRLILYVNQALSALKLLVQSADCAGALDVIDDLQHLLDGDELTGLHCFRHLRDHVAASMESINSILSAEFMRASLHDAADVDAVIVSKAKERASAPSNGRLDDVKLDEEEISNYRDRLLPIIIGLLRTAKLPSVLRIYRDTLTADMKTAIKTGVAELLPVLVARPLESDFSTGERTSDADGGGLSLASRLRNLPSESFVQLLAAIFKIVLAHLVRAAEIKKSIEWIMSNLDGHYAAESVAAAIALGAAAAETVQDSDSQGNYVVAHSPQRIIAKSPSFQGKANEATSPSNMSKNFRADVLRENAEAVFAACDAAHGRWAKLLSVRALLHPKLRLQEFLSIYSISQDFINVTQKTGGRLGFSIRGTLQSQAKAFVDYQHESRVTKIKAVLDQETWSEVDVPDEFQAIVASMLTSDPLVAGNSEVSQGSEVISSNGEAAVADIKEENPEHSAGQTDSSNSFNDTATQEISQHSGQATNINKVDVATSTNSKNSSIKDRGKTASQTLMHRGVNYHMVNCGLILLKMLSEYIDMNDSLPALSSEVVHRVVEILKFFNTRTCQLVLGAGAMQVSGLKSITSKHLALASQVISFVYAIIPDIRRILFLKVPDARRALLQSEIDQVAQDYKVHRDEIHTKLVQIMKERLM

Click here to download the sequence:
Link to NCBI Protein BLAST