Transcript Information: S_Transcript_15386.p1


Annotated TAIR IDAT3G61520.1
Annotated Gene NamePentatricopeptide repeat (PPR) superfamily protein
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr3:22768974-22771274 | Reverse length=766
E-Value1.8E-197
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 15.6833391384593
Replicate 26.7429753251228
Replicate 36.9337140774662
Condition 2: 8 Hour
Replicate 17.8811225085057
Replicate 27.724295566146
Replicate 38.4500163139952
Condition 3: 24 Hour
Replicate 17.3188740083576
Replicate 26.6078632217483
Replicate 36.1926247132766


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_15386.p1 GENE.S_Transcript_15386~~S_Transcript_15386.p1 ORF type:5prime_partial len:782 (+),score=141.86,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|0.0086,PPR_2|PF13041.2|5.9,PPR_2|PF13041.2|3.3e-10,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|7.7e-14,PPR_2|PF13041.2|1e-15,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|4.1e-09,PPR_2|PF13041.2|0.00022,PPR_2|PF13041.2|9.1e-15,PPR_2|PF13041.2|6.4e-16,PPR_2|PF13041.2|2e-08,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|0.00028,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|0.96,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|3.9e-10,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|3.8e-11,PPR_1|PF12854.3|6.9e-08,PPR_1|PF12854.3|3.4e-11,PPR_1|PF12854.3|4.9e-07,PPR_1|PF12854.3|6.5e-09,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|3.2e-10,PPR_1|PF12854.3|8.8e-11,PPR_1|PF12854.3|0.0032,PPR|PF01535.16|0.46,PPR|PF01535.16|4.2,PPR|PF01535.16|0.0013,PPR|PF01535.16|7.9e-05,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|2.6e-09,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|2.9e-07,PPR|PF01535.16|5.3e-07,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|2e-06,PPR|PF01535.16|2.6,PPR_3|PF13812.2|17,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|0.0052,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|8.5e-07,PPR_3|PF13812.2|0.58,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|3.7e-07,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|4.3e+02,ATP13|PF12921.3|9.2e+03,ATP13|PF12921.3|3.6e+02,ATP13|PF12921.3|21,ATP13|PF12921.3|12,ATP13|PF12921.3|22,ATP13|PF12921.3|29,ATP13|PF12921.3|10,ATP13|PF12921.3|16,TPR_19|PF14559.2|1.8e+02,TPR_19|PF14559.2|5.1e+02,TPR_19|PF14559.2|5.5e+03,TPR_19|PF14559.2|7.6,TPR_19|PF14559.2|1.4,TPR_19|PF14559.2|3.7e+03,TPR_19|PF14559.2|2.4e+02,RPN7|PF10602.5|47,RPN7|PF10602.5|4e+02,RPN7|PF10602.5|6.5,RPN7|PF10602.5|0.1 S_Transcript_15386:3-2348(+)
CTTCATTTATCCACTGAAAAAGCCCGACTAGTACTCCAATCCCAGAATCCTAAACCATTGTCTTGCTGCCTTCATTTATCCACTGAAAAAGCCCGACTAGTACTCCAATCCCAGAATCCTAAACCATTGTCTTGCTGCCTTCATTTATCCACTGAAAAACCCCCTCATCTTCAACCACAAACAACAGAGCCATCATCATTCTCATGTCCTATCATAAGCCAAATCGCCGACATTCTCAAATCCAATGACTATGAGACTTGGAAAGGCAATGATCATCTTACCCAACTCTTGTCAGGATCTCAATCTCTCTCCTCTGATGAATACCTGCAAATTACACTATGTTTGGGCGACTCTTCCATTGCTCTCAATTTTGTCGAATACCTTAGATCCAATTCCTTGTTGCCTGATGATAATTCTTTGTCTTGTGTGTTCCAAGCCGTTTTTGAGCTTGCTAGTAATGAACCCAATAGGCAGGAGAAGTTATTGGAGCTCCTTAACACTTCTAAGGAGCTTAATGTACCTTTGAATGAGGGGTCTGCTACCTTTCTTATAAAAAACTTTGGGTTTGACAAAATGCTGGATAATTCAATATTAGCGTATGAAACTTTGGACGCTCAGAAGAGGAAATCTCATGTTAGGAATGTCTTGATTGAGGAGTTGCTGAAAGGCGGGCGCGTCGACTATGCACTCCAGGTGCTCAACGAAATGCTCCAGCCAAATGCTGAGTTCTTGCCGGATGAAAAGACTGGGGAGATTGTCTTTTCTGAGTTGTTGAAGAGTGAGAAGTACGAGAGGTGGATCCGTGAGAAGGAGATTTTGGAGCTTGTGTCTAAGTTTGGCAATCAGGGGGTGTTTCCTGATACATTAAGGCTTACACAGTGGATTACTAAGTTTTGTAGGAGAGGAAAGAGTGATAAAGCTTGGGATCTTCTTCATGTTGTGATGGACTTGAATGGGCCTATTGAGGCTGCTCCTTGTAATGCTTTGTTGACAGGGTTGGGGAAAAACAATCAATACAAGAAGATGAATCTTCTAGTAAAAGAGATGAAAGAGAAAGGAGTAGCTCCAAATGTGGTGACTTTTGGAATTAGTATTAATCATCTTTGTAAGCGTGGGAGAATAGAGGAAGCTCTGGATTTGTTTGAAAAAATGAGAGAAGGCAAGATTGGAGTTGTTGTTGAGCCCGATGTAGTTATCTATAATACTATTATTGATGGCCTATGTAAAGTTGGATGCATAGAACATGGATTAGCTTTCATGCGGAAGATGGTACAAGAGAGTAAGATTTCTCCTAGCAGTGCTACGTATAATTGTCTGATTGATGGGTATTGCAAATCGGGTGAGCTTGATAGGTCCCTTGAATTGTTTCATGAGATGAGCAAGGAAAGGGTTGAGCCAAATATCATTACAGTAAACTGTTTGGTGGATGGCATGTGCAGACATGGAAAAGCTGGTAGTGCACTTGAGTTTTACCGGGAAATGAAACAAAAAGGGATGGAGGGAAATGCGGTAACTTACACAGCATTAATCAGTGGCTTTTGTAGTGTGAACAATTTGAATAAAGCGCTGGAGTTGTTCAATGAGATGCAAGAGAAGTGCACATTAGATGCCATTGTTTACTACACCTTGATTTCTGGTTTGTCCCAAGCTGGACGTATGGATGATGCTGAATTGGTTTTATCAGAGATGAAACATGCTGGATTTCGAGCTGACATTGGTTGCTACAATATAATGATCAATGGTTTTTGCAAGAAGAGTAGGATGGATAAAGTTCATGAGTTGTTGGAGGAAATGGAAGATGCTGAAATAGAGCCTGATAGCTTCACTTATAATACTTTAATTTCACATTTTAGCAAATTTGGGGATCTGAAAATGGCTCTTAAACTTCTTAGGCGAATGGTCAAGGACAATGTTGCTCCTACAGTTGTCACCTATGGAGCACTAATTCGTGCATGCTGTTCAGTGGGAGAACTAGATGAAGCCATGAAGATTTTCCATGAAATGAAGTCCTCCATAATGGTTCCACCCAATACTGTGATATACAATACCTTGATAAGCTCTCTTTGTCAAAAACGGAGGGTGAAGGCTGCTCTCGTTCTATTAGATGACATGAAATTAAAGGGAGTGAACCCTGATACGAACACCTTTAATCCTATATTTAAGAGCCTGCAGGAGGAAAACAGGATTGAAAAAGCCTATGAGCTCATGGACAGAATGGTTGAAGAAGCTTGTAATCCTGACTACATAACCCTAGAAGTACTTACGGAATGGCTCATGGCTGTTGGTCAAGCTGATAAACTAAGAAAATTTGTCCAAGGGTACAAGGTCTCTCTTTCAACAGCTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_15386.p1 GENE.S_Transcript_15386~~S_Transcript_15386.p1 ORF type:5prime_partial len:782 (+),score=141.86,PPR_2|PF13041.2|1e+02,PPR_2|PF13041.2|0.0086,PPR_2|PF13041.2|5.9,PPR_2|PF13041.2|3.3e-10,PPR_2|PF13041.2|1.3e-07,PPR_2|PF13041.2|7.7e-14,PPR_2|PF13041.2|1e-15,PPR_2|PF13041.2|1.8e-15,PPR_2|PF13041.2|4.1e-09,PPR_2|PF13041.2|0.00022,PPR_2|PF13041.2|9.1e-15,PPR_2|PF13041.2|6.4e-16,PPR_2|PF13041.2|2e-08,PPR_2|PF13041.2|3.7e-14,PPR_2|PF13041.2|0.00028,PPR_1|PF12854.3|0.16,PPR_1|PF12854.3|0.96,PPR_1|PF12854.3|3.6e+03,PPR_1|PF12854.3|3.9e-10,PPR_1|PF12854.3|1.6e-08,PPR_1|PF12854.3|3.8e-11,PPR_1|PF12854.3|6.9e-08,PPR_1|PF12854.3|3.4e-11,PPR_1|PF12854.3|4.9e-07,PPR_1|PF12854.3|6.5e-09,PPR_1|PF12854.3|3.5e-07,PPR_1|PF12854.3|3.2e-10,PPR_1|PF12854.3|8.8e-11,PPR_1|PF12854.3|0.0032,PPR|PF01535.16|0.46,PPR|PF01535.16|4.2,PPR|PF01535.16|0.0013,PPR|PF01535.16|7.9e-05,PPR|PF01535.16|5.5e-05,PPR|PF01535.16|2.6e-09,PPR|PF01535.16|2.9e-06,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|1.4e-05,PPR|PF01535.16|2.9e-07,PPR|PF01535.16|5.3e-07,PPR|PF01535.16|1.4e-08,PPR|PF01535.16|2e-06,PPR|PF01535.16|2.6,PPR_3|PF13812.2|17,PPR_3|PF13812.2|37,PPR_3|PF13812.2|0.04,PPR_3|PF13812.2|0.0052,PPR_3|PF13812.2|1.6e+02,PPR_3|PF13812.2|8.5e-07,PPR_3|PF13812.2|0.58,PPR_3|PF13812.2|0.002,PPR_3|PF13812.2|0.0017,PPR_3|PF13812.2|0.00014,PPR_3|PF13812.2|3.7e-07,PPR_3|PF13812.2|0.00012,PPR_3|PF13812.2|0.001,PPR_3|PF13812.2|4.3e+02,ATP13|PF12921.3|9.2e+03,ATP13|PF12921.3|3.6e+02,ATP13|PF12921.3|21,ATP13|PF12921.3|12,ATP13|PF12921.3|22,ATP13|PF12921.3|29,ATP13|PF12921.3|10,ATP13|PF12921.3|16,TPR_19|PF14559.2|1.8e+02,TPR_19|PF14559.2|5.1e+02,TPR_19|PF14559.2|5.5e+03,TPR_19|PF14559.2|7.6,TPR_19|PF14559.2|1.4,TPR_19|PF14559.2|3.7e+03,TPR_19|PF14559.2|2.4e+02,RPN7|PF10602.5|47,RPN7|PF10602.5|4e+02,RPN7|PF10602.5|6.5,RPN7|PF10602.5|0.1 S_Transcript_15386:3-2348(+)
LHLSTEKARLVLQSQNPKPLSCCLHLSTEKARLVLQSQNPKPLSCCLHLSTEKPPHLQPQTTEPSSFSCPIISQIADILKSNDYETWKGNDHLTQLLSGSQSLSSDEYLQITLCLGDSSIALNFVEYLRSNSLLPDDNSLSCVFQAVFELASNEPNRQEKLLELLNTSKELNVPLNEGSATFLIKNFGFDKMLDNSILAYETLDAQKRKSHVRNVLIEELLKGGRVDYALQVLNEMLQPNAEFLPDEKTGEIVFSELLKSEKYERWIREKEILELVSKFGNQGVFPDTLRLTQWITKFCRRGKSDKAWDLLHVVMDLNGPIEAAPCNALLTGLGKNNQYKKMNLLVKEMKEKGVAPNVVTFGISINHLCKRGRIEEALDLFEKMREGKIGVVVEPDVVIYNTIIDGLCKVGCIEHGLAFMRKMVQESKISPSSATYNCLIDGYCKSGELDRSLELFHEMSKERVEPNIITVNCLVDGMCRHGKAGSALEFYREMKQKGMEGNAVTYTALISGFCSVNNLNKALELFNEMQEKCTLDAIVYYTLISGLSQAGRMDDAELVLSEMKHAGFRADIGCYNIMINGFCKKSRMDKVHELLEEMEDAEIEPDSFTYNTLISHFSKFGDLKMALKLLRRMVKDNVAPTVVTYGALIRACCSVGELDEAMKIFHEMKSSIMVPPNTVIYNTLISSLCQKRRVKAALVLLDDMKLKGVNPDTNTFNPIFKSLQEENRIEKAYELMDRMVEEACNPDYITLEVLTEWLMAVGQADKLRKFVQGYKVSLSTA*

Click here to download the sequence:
Link to NCBI Protein BLAST