Transcript Information: S_Transcript_154215.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value9E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1462097770307
Replicate 21.739718172994
Replicate 31.9500384031047
Condition 2: 8 Hour
Replicate 11.2229614518786
Replicate 20.9622300490205
Replicate 31.2224141995688
Condition 3: 24 Hour
Replicate 11.7225356157458
Replicate 21.1372521937952
Replicate 30.58761035352421


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_154215.p1 GENE.S_Transcript_154215~~S_Transcript_154215.p1 ORF type:5prime_partial len:558 (+),score=114.70,UBN2_3|PF14244.2|1.8e-29,Retrotrans_gag|PF03732.13|1.1e-09 S_Transcript_154215:3-1676(+)
TTAGTGAATGGAACTGTTACTAAACCTGTTGCTGATTCTTCTATTCTGATGCTTTGGGAAAGATGCAATAATATGGTAATTTCATGGATTTTGAATGCTTTAGCAAGAGATATTGCAGATAGTGTTCTATATAATGATACTGCTGAACAAATTTGGAAGGATTTGAATGAAAGATTTGGACAATCTAATGGTCCACAGTTGTTTAGATTACAAAAGGATATAAATGAAACATCACAAGGTGATTCTGATGTGCCTACTTACTACACTAGAATGAAAAGACTCTGGGATGAACTTCATTCTTTAGATGTTATGCCTACATGTACATGTGGAGCAACACAGGAGATGATCAGAAGGGAACAAGAAAGAAAACTTATACAGTTTCTTATGGGACTAAATAATGATTTTTCAACTGCTAGAGGAAATATATTAATGATGAAGCCTTTGCCTAGTGTAGCTACAGCTTATTCCTTGCTAATGCAAGATGGTAACCAAAGAGAATTGATGACTGGACATAGCAATGTAAATTTTGTGAATGAAGCATCTTCATTTCTTGCTGGTGATCAGAGGAATTTTAGGAGAAATTTCTCAAAACCTGATTTCAGAGGAAATAATCAGAAGTTTGATTCAAGGAGAGACAATAGGAGACCTATCATGTTTTGTCAGTATTGCAAGAGACAAGGACACTCTGAGGAGAAATGTTGGAAGAAACATGGCTATCCTCCCCAATTTCAGCAAAATAATAAAGGGAACAGAATGGCTGCTGCAGTCACAAATGAGTTCTTTGAGGATTATTCTGTGGATGATAAAGATAACACAACTCAAAATACTGGTCAACCTGGAGTATCAGCTGGTTCTGGTAACACTGATTGTAGTAACACCTCTGCTGTCAACGATCTGAGTCCTGATCAATGTCAACAAATCATTCAATTTCTTGCTAATCAAATGAAAGGCACTTCTATACCATATTCTCAAGGGTCTGGCACTACTTTTGCTAATTTTGCTGGTAAGTCAGTTTGTCTTTCTTCTGGTGAGCTAGCTTCTTGTACTTGTTTTAATTGTGTAGCTACTGCTGACATTATGTGGATAATTGACACTGGCGCATCTGATCATATGTGTTATGATCATTCTCTGTTCATTTCTACCTCTCCTTTTCCTAAATCCTTTCACATCACTCTTCCTACTGGAAATTATGTTCCTGTGACTCACTATGGTACTGTCAAGCTGAAAGATGACCTAGTTTTACACGATGTCTTGTATGTTCCATCTTTCAAATTCAACCTTCTCTCTACTGGAAAACTATGCAAGCAACTTGATGGAACTGTGGTGTTTACTAGTCACAATTGCACTTTGCAGGCCCCTTCAATGAAGAGGCCGCAGGAAATTGGTAAAGCACATGGAAGTCTTTACATATTCAAGCATGATACAAGAGTACTCAAGCATGAGATGGCTAAGGCACATGTTGTTTCTAATTCTGTTGTTCATAATAAGTCTGGAAAACAAGAGCATGTGATACATGTTGTTGATAATAATGCTGGTAATTGTACTTTGGGATCTTCTGCTACTGACAATGTAAATAACAACTCTACTGTTGCGAATGATAATATGTTTTGCTCTACTTTTCTTGCCAAATGCTCTTTAGATACATGGCATGCTAGATTGGGCCACCTACCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_154215.p1 GENE.S_Transcript_154215~~S_Transcript_154215.p1 ORF type:5prime_partial len:558 (+),score=114.70,UBN2_3|PF14244.2|1.8e-29,Retrotrans_gag|PF03732.13|1.1e-09 S_Transcript_154215:3-1676(+)
LVNGTVTKPVADSSILMLWERCNNMVISWILNALARDIADSVLYNDTAEQIWKDLNERFGQSNGPQLFRLQKDINETSQGDSDVPTYYTRMKRLWDELHSLDVMPTCTCGATQEMIRREQERKLIQFLMGLNNDFSTARGNILMMKPLPSVATAYSLLMQDGNQRELMTGHSNVNFVNEASSFLAGDQRNFRRNFSKPDFRGNNQKFDSRRDNRRPIMFCQYCKRQGHSEEKCWKKHGYPPQFQQNNKGNRMAAAVTNEFFEDYSVDDKDNTTQNTGQPGVSAGSGNTDCSNTSAVNDLSPDQCQQIIQFLANQMKGTSIPYSQGSGTTFANFAGKSVCLSSGELASCTCFNCVATADIMWIIDTGASDHMCYDHSLFISTSPFPKSFHITLPTGNYVPVTHYGTVKLKDDLVLHDVLYVPSFKFNLLSTGKLCKQLDGTVVFTSHNCTLQAPSMKRPQEIGKAHGSLYIFKHDTRVLKHEMAKAHVVSNSVVHNKSGKQEHVIHVVDNNAGNCTLGSSATDNVNNNSTVANDNMFCSTFLAKCSLDTWHARLGHLP*

Click here to download the sequence:
Link to NCBI Protein BLAST