Transcript Information: S_Transcript_154216.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value4E-21
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.4306310879479
Replicate 20.3570030672737
Replicate 30.35811138026409
Condition 2: 8 Hour
Replicate 10.55211366516849
Replicate 20.50680563261517
Replicate 30.41389995349478
Condition 3: 24 Hour
Replicate 10.14139083165433
Replicate 20.44007401119121
Replicate 30.081624739175133


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_154216.p1 GENE.S_Transcript_154216~~S_Transcript_154216.p1 ORF type:5prime_partial len:309 (+),score=68.74,UBN2_3|PF14244.2|6e-30,Retrotrans_gag|PF03732.13|3.8e-10 S_Transcript_154216:3-929(+)
TTAGTGAATGGAACTGTTACTAAACCTGTTGCTGATTCTTCTATTCTGATGCTTTGGGAAAGATGCAATAATATGGTAATTTCATGGATTTTGAATGCTTTAGCAAGAGATATTGCAGATAGTGTTCTATATAATGATACTGCTGAACAAATTTGGAAGGATTTGAATGAAAGATTTGGACAATCTAATGGTCCACAGTTGTTTAGATTACAAAAGGATATAAATGAAACATCACAAGGTGATTCTGATGTGCCTACTTACTACACTAGAATGAAAAGACTCTGGGATGAACTTCATTCTTTAGATGTTATGCCTACATGTACATGTGGAGCAACACAGGAGATGATCAGAAGGGAACAAGAAAGAAAACTTATACAGTTTCTTATGGGACTAAATAATGATTTTTCAACTGCTAGAGGAAATATATTAATGATGAAGCCTTTGCCTAGTGTAGCTACAGCTTATTCCTTGCTAATGCAAGATGGTAACCAAAGAGAATTGATGACTGGACATAGCAATGTAAATTTTGTGAATGAAGCATCTTCATTTCTTGCTGGTGATCAGAGGAATTTTGGAAGGAATTTTTCAAGGCCTGATGTGAGAGGGAATAACTATCAGAGATATGACTCAAGAAGGGACAATAAGAGACCTATTCTATTTTGTCAATACTGTAAAAGACAAGGACATTCTGAAGACAAATGTTGGAAAAAGCATGGTTATCCTCCTCAATTTCAACAAAACAATAATTTCAAAGGAAAAAGAATGGCTGCTATGGTCCAAAATGAGTTTACTGATGCTTATTTTATTGATGAAAATGATCCTCAAGATGCTGGAAATTTATCCCCTAATTCTAATGTTGGAAATTTTATTCCTCCTACTAATTCTGCTGTCTGGAAATGTTTCTGCTACTGGAAATCTGAGTCTTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_154216.p1 GENE.S_Transcript_154216~~S_Transcript_154216.p1 ORF type:5prime_partial len:309 (+),score=68.74,UBN2_3|PF14244.2|6e-30,Retrotrans_gag|PF03732.13|3.8e-10 S_Transcript_154216:3-929(+)
LVNGTVTKPVADSSILMLWERCNNMVISWILNALARDIADSVLYNDTAEQIWKDLNERFGQSNGPQLFRLQKDINETSQGDSDVPTYYTRMKRLWDELHSLDVMPTCTCGATQEMIRREQERKLIQFLMGLNNDFSTARGNILMMKPLPSVATAYSLLMQDGNQRELMTGHSNVNFVNEASSFLAGDQRNFGRNFSRPDVRGNNYQRYDSRRDNKRPILFCQYCKRQGHSEDKCWKKHGYPPQFQQNNNFKGKRMAAMVQNEFTDAYFIDENDPQDAGNLSPNSNVGNFIPPTNSAVWKCFCYWKSES*

Click here to download the sequence:
Link to NCBI Protein BLAST