Transcript Information: S_Transcript_154224.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value2E-28
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.55443752573293
Replicate 20.52530451327416
Replicate 30.43911276389525
Condition 2: 8 Hour
Replicate 10.88855792988054
Replicate 20.4660801799943
Replicate 30.9516003395081
Condition 3: 24 Hour
Replicate 10.78017441037836
Replicate 20.74197002184471
Replicate 31.4262465586226


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_154224.p1 GENE.S_Transcript_154224~~S_Transcript_154224.p1 ORF type:complete len:336 (+),score=53.61,UBN2_3|PF14244.2|3.9e-45,Retrotrans_gag|PF03732.13|3.9e-09,Retrotrans_gag|PF03732.13|5.1e+03 S_Transcript_154224:1064-2071(+)
ATGGCCTCCAGCAATTCTAATCCCAGTCCTACTGTCATAGATGCGACGAATCCTCTCTACCTTCATCCTAGTGATCACCCTGGTATGATGTTAACTAGTACACCTTTCGATGGTTCTGGCTTTAATTCATGGAAAAGAAGCATGTTGATTGCATTATCTGCTAAGAATAAATTGGGAATTGTCAATGGAACTATAGCTAAACCTGCTGCCAATTCTGAGAGTCTGTCTGTATGGGAAAGATGTAATAATATGGTTATATCGTGGTTATTGAATGCATTGAGTAAAGACATAGCAGACAGTGTGTTGTATAGTGAAACTGCTGAAGAAATATGGAAAGAATTAAACGAAAGATTTGGCCAATCGAATGGTCCACAGTTGTATAAGTTGCAGAAAGATATCAATGAGATATCTCAGGGTAGCACTGATGTACCCGTGTATTTCACCAAAACGAAAAGATTGTGGGATAAGTTGAATTCAATTGACGCCCTACCTGTTTGCACTTGTGGTGCTGTCCAAGAAATAAATAGGAGAGAACAAGAAAGGAGACTCATACAATTTTTGATGGGCTTGAATGATGATTATACAGTAGCCAGAGGCAACATACTGATGATGAAACCACTTCCAAGTGTATCAACTGCATATTCTCTATTGATGCAAGATGAAAAACAAAGAGAAACAAAATCTACTGTTACCAATTTTACTAGTGATGCATCCTCTTTCCTAGCAAATAATCAAAGACCTTTCATGAGATCTGATTCAAAAGGCAACAATATTCAGAGGTTTGATCCTAGAAGGGAACCAAGAAAGACTGGAATGTTCTGTACTTATTGTAAAAGGCAGGGACATACTGAGGATAAATGCTGGAAGAAACATGGATATCCACCTCAATATTCACAAAACTCATACAGAAATGACAACTATAAAGGGAAAAGAATGGCTAACAACGTCCAAGGGAAGTATTTCAATGGTAATCTGATGGATGAAGAACAACAGTACAGTGAAAATTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_154224.p1 GENE.S_Transcript_154224~~S_Transcript_154224.p1 ORF type:complete len:336 (+),score=53.61,UBN2_3|PF14244.2|3.9e-45,Retrotrans_gag|PF03732.13|3.9e-09,Retrotrans_gag|PF03732.13|5.1e+03 S_Transcript_154224:1064-2071(+)
MASSNSNPSPTVIDATNPLYLHPSDHPGMMLTSTPFDGSGFNSWKRSMLIALSAKNKLGIVNGTIAKPAANSESLSVWERCNNMVISWLLNALSKDIADSVLYSETAEEIWKELNERFGQSNGPQLYKLQKDINEISQGSTDVPVYFTKTKRLWDKLNSIDALPVCTCGAVQEINRREQERRLIQFLMGLNDDYTVARGNILMMKPLPSVSTAYSLLMQDEKQRETKSTVTNFTSDASSFLANNQRPFMRSDSKGNNIQRFDPRREPRKTGMFCTYCKRQGHTEDKCWKKHGYPPQYSQNSYRNDNYKGKRMANNVQGKYFNGNLMDEEQQYSEN*

Click here to download the sequence:
Link to NCBI Protein BLAST