Transcript Information: S_Transcript_154235.p1


Annotated TAIR IDAT5G48600.2
Annotated Gene Namestructural maintenance of chromosome 3
Annotated Gene Symbol(s)SMC3
Annotation TypeOrtholog
Chromosome Positionchr5:19701908-19709091 | Forward length=1244
E-Value0
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 14.3293877607471
Replicate 23.8178830414519
Replicate 32.7061111956798
Condition 2: 8 Hour
Replicate 13.0610608110717
Replicate 23.9248857262678
Replicate 34.5555399985128
Condition 3: 24 Hour
Replicate 11.3065121704901
Replicate 23.0182269005183
Replicate 32.6951785887445


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_154235.p1 GENE.S_Transcript_154235~~S_Transcript_154235.p1 ORF type:complete len:1254 (+),score=359.24,SMC_N|PF02463.15|4.6e-75,SMC_hinge|PF06470.9|1.6e+03,SMC_hinge|PF06470.9|3.5e+03,SMC_hinge|PF06470.9|1.4e-23,AAA_21|PF13304.2|9.3e-08,AAA_21|PF13304.2|1.6e+04,AAA_21|PF13304.2|7.5e+03,AAA_21|PF13304.2|1.6e-05,AAA_29|PF13555.2|9.2e-06 S_Transcript_154235:155-3916(+)
ATGGGGAAAGAGATCGAAATGGAAATGGAGGATAATTCAACAACAACCACTTCAACACCTTCAGAGTCAAAAAATCACAGCAATTCTGGAACTCCCAGACTCTTCATTAAAGAGATGGTCATGAGAAACTTCAAATCTTATGCTGGTGAACAACGTGTTGGCCCTTTTCACAAGAGTTTTTCGGCAGTTGTGGGGCCCAATGGGAGCGGAAAGAGCAACGTCATCGATGCCATGCTCTTTGTATTTGGCAAACGAGCTAAGCAGATGAGGTTGAACAAAGTCTCAGAGCTTATTCACAACTCCACTAATCACCAGAATTTAGACAGTGCTGGTGTGTCGGTCCATTTTCAAGAAATAATTGATCTGGATGATGGGGAGTATGAAGTTGTTCCTGGTAGCGAGTTTGTTATAGCAAGGGTTGCGTTTCGTGACAACTCTTCAAAGTATTACATTAACAATAAAGCAAGTAATTTTACTGAGGTTACCACGAAATTGAAGGGGAAAGGTGTGGACTTGGATAATAACCGGTTTTTAATCCTTCAGGGGGAGGTTGAACAAATTTCATTAATGAAGCCAAAAGCTCAAGGACCTCATGATGAAGGTTTTCTTGAATACCTTGAAGATATAATTGGGACTAACAAATATGTAGAGAAGATAGAGGACTCCAGGAAGCAATTGGAGTCTCTGAATGAGAAGAGATCTGGAGTTGTGCAAATGGTCAAGCTAGCAGAGAAAGAAAGAGATAGCTTAGAAGATGTGAAAAATGAGGCTGAAGGTTATATGCTGAAGGAACTGTCACTGTTGAAATGGCGAGAGAAAGCTACAAAACTTGCTGCTGAAGACAACAATGCGAAAATGTTGGAGTTGCAAAGTAACTTATCCAGCTTGGAAGAAAATCTGAAGTCCAAAAGAGATGAGATTCGGGAAAATACTTCTAATATGAAGGAGATTGAAGCTTTGCACAACAAGTATCTTAAAAGACAAGAGGAACTTGATAATGACCTCAGGGCCTGTAAAGAGGAGTTCAAGGAGTTTGAAAGACAGGATGTGAAACACCGGGAAGATTTGAAGCATATCAAACAAAAGATCAAAAAACTGGAGGATAAAATTGAGAAGGATTTCTCCAAGATTGACAACTTCACAAAAGATAGTGAAAATGCTTCAATAATGATTCCGAAACTGGAAGGAGAGATCCCTGAACTGCAAAAGCGCTTATTTGCTGAAGATAAACTTTTAGAAGAAATCAAGGAGAAGTCTAAAGGTGAAACTGAGAGGTTCCGAGCTGAGCTGGCCAATGTTCGAGCTGAATTGGATCCTTGGGAGAATCAACAGATGGACCACAAGGGGAAACTTGAAGTTGCATCCACTGAACAGAAGCTCTTAAGTGAAAAGCATGAAGATGCTCGTAAAGCTTTTGAGGATGCACAAAAGCAGATAAATGATATAGCTGAAAAGATAAAATCCAAAACCTCAACTATCACAAGCATCCAAAACGAATTGGAGAAAAACAAGCGTGCAGCTTCTGATGCTCGTAAAGTAGAGGAAGAATGCGTCAAGGAACAAGAAGCTCTCATTCCCCTTGAGCAAGCTGCAAGGCAAAAGGTCGCTGAGCTTGTATCCGTAAGGGAGTCCGAAAAAAGCCAAGGATCTGTCCTAAAAGAGATTTTACAAGCAAAGGAAACAAATCAGATCAATGGAATTTATGGACGAATGGGTGATTTGGGTGCTATAGATGCTAAATATGATGTCGCCATATCAACAGCATGCCCTGGACTTGATTATATTCTAGTAGAGACTGCTGAAGCAGCACAGAAATGTGTAGACTTGCTTCGACAAAAGAATCTAGGTGTTGCCACTTTCATGATACTGGAAAAACAAGAAAGGCATCGTGATCTGCTGAAGAAGAAAGTAAATACACCAGAGGGGGTTCCTCGCCTTTTTGATTTGATCAAGGTGAAGGACGAAAGACTAAAGGTCGCTTTCTATGAGTTAATGAGGAACACTGTAGTAGCTAAGGACCTTGACCAGGCAGCACGTATAGCATACGGTGGAAACAAAGAATTCAGACGAGTGGTTACATTAGATGGTGCTCTCTTTGAAAAATCAGGGACAATGAGTGGCGGGGGTAGTAAACCACGAGGAGGGAAAATGGGGACATCTATTTGTGCTGACACTGTTTCTAGAGAAGCTGTTGCTAATGCTGAAAGGGATCTTGCTACAATGGTTGATAAACTAGATGCAATACGGAGAAGAATTTCCGATTCTGTTCAGAGTTACCAATCTCTAGAGAAAGCTATACAAAACTTAGAGATGGAATTGGCCAAGAGTCAGAAAGAGATTGACAGTCTGAATACGCAACATGATTATCTGAAGAATCAGCTCGATTCTCTAAAATCTGCTGCAAAACCAAGGAAGGAGGAGGTGAGCAGGTTGGAGGAGCTCCAGAAAATTATAGCTGATGAAGAAAAGCAGATTGCTATACTGTTACAGGGATCTAAGCAACTGAAGGAGAAGGCATCAGATCTTCAGAGTAAAATAGAAAATGCTGGTGGTGAAAGACTTAGAAACCAAAAGGGAAAGGTTGACAAGATTCAATCTGATATTGACAAACGTGGGACAGAGATTAACCGCTACAAAGTTCAAATTGAAACTGGTGAGAAAATGATCAAGAAGTTGAATAAAGGGATCGAGGATTCAAAGAAGGAAAAAGAATTGCTCATTCAGGAAAAGGAAATGCTACTTTCAACGTTTAAAGAGATAGAACAAAAGGCTTTTGTAGTGCAAGAGAACTTTAAAAAGACGCAGCAGCTGATTGATGAACACAGGGAGGTTCTTGAGAAAGCAAAATCTGACTATGACAGTTCAAAGACGATAATGGATGAATTACGAGCAACTGAGGTTGATGCAGATTTCAAACTTAAAGATATGAAGAAACTTCACAAAGAGCTGGAAATGAAGGGAAGAGTGTACACCAAGAAGCTTGACGACCTTCAAAGTGCTCTCAATAAGCATTTGGAACAAATTGCGAAAGATTCTGTGGACCATGAAAAGCTTCAGGCAACCTTGGCAGATGAGACGCTTGCCTTGCCTTGTGACCTTAAAAGGGCTCTGGAGATGGTGGCGTTGCTGGAAGCACAACTGAAAGAGATGAATCCAAATCTTGATTCAATCTCTGAATATCGACAAAAAGTGGCATCCTACGATGAACGGGTGGATGAACTTGATGCGGTTACTAAAGAACGTGATGACATCAAGAAGCAGTATGATGAATGGAGAAAGAAAAGGCTAGATGACTTCATGGCTGGATTTAATACCATATCTCTCAAATTGAAGGAAATGTATCAGATGATTACTCTTGGTGGAGATGCAGAGCTTGAGTTAGTGGATTCCTTGGATCCTTTCTCTGAAGGGGTTGTTTTCAGTGTGAGACCCCCAAAGAAGAGCTGGAAAAATATTGCAAATTTATCAGGTGGTGAAAAGACTCTCAGCTCTCTTGCTCTTGTTTTTGCACTTCATCACTACAAACCTACACCACTCTATGTCATGGATGAGATTGATGCTGCCCTTGATTTCAAGAATGTCTCGATTGTTGGGCATTATGTAAAGGATCGCACTAAAAATGCACAGTTCATAATCATAAGCCTCAGAAACAACATGTTTGAGCTGGCAGACAGGCTTGTTGGCATATATAAAACTGATAATTGCACAAAGAGTATAACGATTAACCCTAGTAGTTTTGTGCTCTGTCAGAAGGCTGCTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_154235.p1 GENE.S_Transcript_154235~~S_Transcript_154235.p1 ORF type:complete len:1254 (+),score=359.24,SMC_N|PF02463.15|4.6e-75,SMC_hinge|PF06470.9|1.6e+03,SMC_hinge|PF06470.9|3.5e+03,SMC_hinge|PF06470.9|1.4e-23,AAA_21|PF13304.2|9.3e-08,AAA_21|PF13304.2|1.6e+04,AAA_21|PF13304.2|7.5e+03,AAA_21|PF13304.2|1.6e-05,AAA_29|PF13555.2|9.2e-06 S_Transcript_154235:155-3916(+)
MGKEIEMEMEDNSTTTTSTPSESKNHSNSGTPRLFIKEMVMRNFKSYAGEQRVGPFHKSFSAVVGPNGSGKSNVIDAMLFVFGKRAKQMRLNKVSELIHNSTNHQNLDSAGVSVHFQEIIDLDDGEYEVVPGSEFVIARVAFRDNSSKYYINNKASNFTEVTTKLKGKGVDLDNNRFLILQGEVEQISLMKPKAQGPHDEGFLEYLEDIIGTNKYVEKIEDSRKQLESLNEKRSGVVQMVKLAEKERDSLEDVKNEAEGYMLKELSLLKWREKATKLAAEDNNAKMLELQSNLSSLEENLKSKRDEIRENTSNMKEIEALHNKYLKRQEELDNDLRACKEEFKEFERQDVKHREDLKHIKQKIKKLEDKIEKDFSKIDNFTKDSENASIMIPKLEGEIPELQKRLFAEDKLLEEIKEKSKGETERFRAELANVRAELDPWENQQMDHKGKLEVASTEQKLLSEKHEDARKAFEDAQKQINDIAEKIKSKTSTITSIQNELEKNKRAASDARKVEEECVKEQEALIPLEQAARQKVAELVSVRESEKSQGSVLKEILQAKETNQINGIYGRMGDLGAIDAKYDVAISTACPGLDYILVETAEAAQKCVDLLRQKNLGVATFMILEKQERHRDLLKKKVNTPEGVPRLFDLIKVKDERLKVAFYELMRNTVVAKDLDQAARIAYGGNKEFRRVVTLDGALFEKSGTMSGGGSKPRGGKMGTSICADTVSREAVANAERDLATMVDKLDAIRRRISDSVQSYQSLEKAIQNLEMELAKSQKEIDSLNTQHDYLKNQLDSLKSAAKPRKEEVSRLEELQKIIADEEKQIAILLQGSKQLKEKASDLQSKIENAGGERLRNQKGKVDKIQSDIDKRGTEINRYKVQIETGEKMIKKLNKGIEDSKKEKELLIQEKEMLLSTFKEIEQKAFVVQENFKKTQQLIDEHREVLEKAKSDYDSSKTIMDELRATEVDADFKLKDMKKLHKELEMKGRVYTKKLDDLQSALNKHLEQIAKDSVDHEKLQATLADETLALPCDLKRALEMVALLEAQLKEMNPNLDSISEYRQKVASYDERVDELDAVTKERDDIKKQYDEWRKKRLDDFMAGFNTISLKLKEMYQMITLGGDAELELVDSLDPFSEGVVFSVRPPKKSWKNIANLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFKNVSIVGHYVKDRTKNAQFIIISLRNNMFELADRLVGIYKTDNCTKSITINPSSFVLCQKAA*

Click here to download the sequence:
Link to NCBI Protein BLAST