Transcript Information: S_Transcript_154367.p1


Annotated TAIR IDAT1G21280.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr1:7447690-7448403 | Reverse length=237
E-Value3E-08
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10
Replicate 20
Replicate 30.18442736083601
Condition 2: 8 Hour
Replicate 10.21325390317133
Replicate 20.44743697279453
Replicate 30.21315847604981
Condition 3: 24 Hour
Replicate 10.43689766981188
Replicate 20
Replicate 30


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_154367.p1 GENE.S_Transcript_154367~~S_Transcript_154367.p1 ORF type:3prime_partial len:100 (+),score=13.91,UBN2_3|PF14244.2|4.7e-21 S_Transcript_154367:538-834(+)
ATGGCTACTGATTCGAACAATTTGACTCCTCCGGTGATTGATATTCACAGTGAGCTGTATATTCATCATGGCGATGTGTCTAGTAATTTCATGCTTGCGACGCAGAAATTGAATGGCGATAATTTTCTAGAGTGGAAGCGCTCTGCAAAAATTGCCTTAAGTGCCAAAAACAAGCTAGGCTTTGTTCAAGGTACTTGTGCTAAACATTCTGTTGATTCTCCGCTTTTATCTCATTGGGAGAGATGTAAAAATCTAGTAATCACTTGGATTTTGCATTCTGTTGATCCTGAAATTGGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_154367.p1 GENE.S_Transcript_154367~~S_Transcript_154367.p1 ORF type:3prime_partial len:100 (+),score=13.91,UBN2_3|PF14244.2|4.7e-21 S_Transcript_154367:538-834(+)
MATDSNNLTPPVIDIHSELYIHHGDVSSNFMLATQKLNGDNFLEWKRSAKIALSAKNKLGFVQGTCAKHSVDSPLLSHWERCKNLVITWILHSVDPEIG

Click here to download the sequence:
Link to NCBI Protein BLAST