Transcript Information: S_Transcript_155533.p1


Annotated TAIR IDAT5G49480.1
Annotated Gene NameCa2+-binding protein 1
Annotated Gene Symbol(s)ATCP1, CP1
Annotation TypeOrtholog
Chromosome Positionchr5:20070812-20071294 | Forward length=160
E-Value1E-54
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.4440354539645
Replicate 21.8169356106189
Replicate 31.7357869255153
Condition 2: 8 Hour
Replicate 11.6307651418984
Replicate 20.92119376751815
Replicate 31.6300354050868
Condition 3: 24 Hour
Replicate 11.0279945172044
Replicate 21.4664819255284
Replicate 32.5222044405116


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_155533.p1 GENE.S_Transcript_155533~~S_Transcript_155533.p1 ORF type:complete len:170 (+),score=31.16,EF-hand_1|PF00036.28|2.5e-06,EF-hand_1|PF00036.28|5.3e-06,EF-hand_1|PF00036.28|0.0001,EF-hand_1|PF00036.28|9.3e+03,EF-hand_7|PF13499.2|3.5e-11,EF-hand_7|PF13499.2|4.1e-05,EF-hand_6|PF13405.2|1.3e-05,EF-hand_6|PF13405.2|5.1e+02,EF-hand_6|PF13405.2|0.0098,EF-hand_6|PF13405.2|7.2e-05,EF-hand_5|PF13202.2|0.00012,EF-hand_5|PF13202.2|0.00026,EF-hand_5|PF13202.2|0.00018,EF-hand_8|PF13833.2|3.4e-07,EF-hand_8|PF13833.2|0.0011,EF-hand_8|PF13833.2|0.12 S_Transcript_155533:297-806(+)
ATGTGTCCAACGGGAACAACCATACGCCCATTGACACCCAGCGACGCCACATCAGAATACCGGCGAGCATTCGAGGTGATCGACGGAGACCACGACGGAAAGATCAGCGGCGATGATCTGAGATCATTCATGGCGTCGATCTCCGGCGACATCCAAGAGGAGGAAATGATAAAGGCGATGATTTCCCTCGCCGATGCGAATAAGGACGGGTTTGTTCAATACGACGAGTTTGAGCGCGTTTTGAAGCAGAGGAAAGGGAGAAATGGGAAGGAGAAGGTGAATGGTTACGGTGACGCTGGGGTGATGGAAGATGTGTTTAGGGCGATGGATCAGGACGGTGACGGGCGGTTGGGATTGGAGGATTTGAGAAGTTATTTGGGTCGGGCTGGGATTAAGGTTGGGGATGAGGAGATTCAGGCTATGATTAAGTTGGGTGGTGGAGATGTTGGAGAGGGGGTTTCTTTTGATGGGTTCGTTAATATCTTGGCTGTTCATGATTTGGTCGGCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_155533.p1 GENE.S_Transcript_155533~~S_Transcript_155533.p1 ORF type:complete len:170 (+),score=31.16,EF-hand_1|PF00036.28|2.5e-06,EF-hand_1|PF00036.28|5.3e-06,EF-hand_1|PF00036.28|0.0001,EF-hand_1|PF00036.28|9.3e+03,EF-hand_7|PF13499.2|3.5e-11,EF-hand_7|PF13499.2|4.1e-05,EF-hand_6|PF13405.2|1.3e-05,EF-hand_6|PF13405.2|5.1e+02,EF-hand_6|PF13405.2|0.0098,EF-hand_6|PF13405.2|7.2e-05,EF-hand_5|PF13202.2|0.00012,EF-hand_5|PF13202.2|0.00026,EF-hand_5|PF13202.2|0.00018,EF-hand_8|PF13833.2|3.4e-07,EF-hand_8|PF13833.2|0.0011,EF-hand_8|PF13833.2|0.12 S_Transcript_155533:297-806(+)
MCPTGTTIRPLTPSDATSEYRRAFEVIDGDHDGKISGDDLRSFMASISGDIQEEEMIKAMISLADANKDGFVQYDEFERVLKQRKGRNGKEKVNGYGDAGVMEDVFRAMDQDGDGRLGLEDLRSYLGRAGIKVGDEEIQAMIKLGGGDVGEGVSFDGFVNILAVHDLVG*

Click here to download the sequence:
Link to NCBI Protein BLAST