Transcript Information: S_Transcript_156472.p1


Annotated TAIR IDAT5G38380.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15345660-15348217 | Forward length=361
E-Value2.5E-53
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 10.84041056532149
Replicate 20.69671967023731
Replicate 30.1941340640379
Condition 2: 8 Hour
Replicate 10.89791117124771
Replicate 20
Replicate 30.44875468642066
Condition 3: 24 Hour
Replicate 10.22994614200625
Replicate 20.47713287529152
Replicate 30.26549520426438


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_156472.p1 GENE.S_Transcript_156472~~S_Transcript_156472.p1 ORF type:internal len:95 (+),score=18.83 S_Transcript_156472:3-284(+)
GGGAGACCGCTTTCTAATACCCAGGTTGTACCTTCTATGATAAATGGTGCAATTACAGCATTGTACTTCATCCTGTGGGTGAAAGGGGTCAAATCATGTGGTCCGCTTAGAGCAATTCTTGCTGAGTATTCTGGTGCTGTACTTGGTGTACTGTCTGCTGTTTTGTATGGACGCAGGGGTCATATCTGGAAGAAGGTTGGTGGACTTGTTGCAATGCTGGCATCACTCTACTTTTTATCTCAAGGATGGGCCATGGCTTCTTTTTCTCCTTTCTATATCCTT

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_156472.p1 GENE.S_Transcript_156472~~S_Transcript_156472.p1 ORF type:internal len:95 (+),score=18.83 S_Transcript_156472:3-284(+)
GRPLSNTQVVPSMINGAITALYFILWVKGVKSCGPLRAILAEYSGAVLGVLSAVLYGRRGHIWKKVGGLVAMLASLYFLSQGWAMASFSPFYIL

Click here to download the sequence:
Link to NCBI Protein BLAST