Transcript Information: S_Transcript_156473.p1


Annotated TAIR IDAT5G38380.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT2G04620.1); Has 123 Blast hits to 121 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 69; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:15345660-15348217 | Forward length=361
E-Value6E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.1916589252502
Replicate 23.8934334513261
Replicate 30.86789346275767
Condition 2: 8 Hour
Replicate 11.2544347245372
Replicate 22.1055857543272
Replicate 32.0061974216453
Condition 3: 24 Hour
Replicate 11.5419917758066
Replicate 21.5997984642128
Replicate 32.6705694076005


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_156473.p1 GENE.S_Transcript_156473~~S_Transcript_156473.p1 ORF type:5prime_partial len:85 (+),score=12.28 S_Transcript_156473:3-257(+)
GGGAGACCGCTTTCTAATACCCAGGTTGTACCTTCTATGATAAATGGTGCAATTACAGCATTGTACTTCATCCTGTGGGTGAAAGGGGTCAAATCATGTGGTCCGCTTAGAGCAATTCTTGCTGAGTATTCTGGTGCTGTACTTGGTGTACTGTCTGCTGTTTTGTATGGACGCAGGGGTCATATCTGGAAGAAGGTAGCTCGTAATTGCTCACTCTGTTTATTCTCGGCCTTCTTCAACTCCTCCACCACTTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_156473.p1 GENE.S_Transcript_156473~~S_Transcript_156473.p1 ORF type:5prime_partial len:85 (+),score=12.28 S_Transcript_156473:3-257(+)
GRPLSNTQVVPSMINGAITALYFILWVKGVKSCGPLRAILAEYSGAVLGVLSAVLYGRRGHIWKKVARNCSLCLFSAFFNSSTT*

Click here to download the sequence:
Link to NCBI Protein BLAST