Transcript Information: S_Transcript_156574.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value1.3E-284
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 114.344163509788
Replicate 217.053119451565
Replicate 315.904744879435
Condition 2: 8 Hour
Replicate 118.243969239199
Replicate 218.215610704365
Replicate 319.604713049536
Condition 3: 24 Hour
Replicate 116.383662617946
Replicate 215.594365763542
Replicate 317.412466435642


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_156574.p1 GENE.S_Transcript_156574~~S_Transcript_156574.p1 ORF type:complete len:436 (-),score=101.30,AAA|PF00004.25|7.2e-43,Vps4_C|PF09336.6|3.7e+03,Vps4_C|PF09336.6|9.3e-23,MIT|PF04212.14|2.7e-19,MIT|PF04212.14|8e+03,AAA_5|PF07728.10|4.2e-05 S_Transcript_156574:178-1485(-)
ATGTACAGTAATTTCAAAGAACAAGCGATCGAGTACGTAAAACAAGCGGTACAAGAAGACAATGCGGGGAACTACGCAAAAGCTTTCCCTCTTTACATGAACGCCTTGGAGTACTTCAAGGCTCATCTTAAGCACGAGGAGAACCCCAAGATTCGCGAAGCCATCATTCAGAAATTCACCGAGTATCTCCGCCGTGCTGGGGAGATTCGCGCTGTTCTTGATGAAGGCGGCGGCTCTGGTCCGGCATCCTATGGTGGTGATGCTGCCGTCGCTGCTCGGCCGAATGGGAAACCGAAGGATGGGAAGGATGATGGTGAGGGAGAAGATGCTGAGCAATCGAAGTTGAGAGCTGGATTGAATTCTGCTATTATCAGGGAAAAGCCGAATGTTAAGTGGAATGATGTGGCTGGTTTGGAGAGTGCTAAACAGGCCTTGCAAGAGGCTGTTATCTTGCCTGTCAAGTTTCCTCAGTTCTTCACTGGTAAGAGACGACCATGGAGAGCATTTCTTTTGTATGGACCACCAGGAACAGGAAAGTCATATTTAGCCAAGGCTGTTGCAACAGAAGCAGATTCCACATTCTTCAGTGTATCCTCTTCAGACTTGGTCTCTAAGTGGATGGGTGAAAGTGAAAAATTAGTCTCCAATCTTTTCCAAATGGCTCGTGAAAGTTCCCCTTCAATTATTTTTATTGATGAAATAGATTCATTATGTGTTCAGCGAGAAGGAAATGAAAGCGAAGCTTCTAGATGTATCAAAACAGAGCTCCTAGTGCAGATGCAGGGTGTTGGACACAATGATGAAAAAGTTCTTGTTCTTGCTGCAACAAACACTCCGTACGCTCTAGATCAGGCTATTCGACGACGTTTTGATAAGCGTATTTATATCCCTCTACCTGATCTGAAAGCTCGGCATCATATGTTCAAGGTTCATCTTGGGGATACACCACACAACTTGACCGAAAGTGACTTTGAATTCTTAGCTCGTAAAACAGAGGGCTTCTCGGGTTCAGATATATCTGTTTGTGTCAAGGATGTACTTTTTGAACCTGTTCGGAAAACCCAAGACGCCATGTTCTTCTACAAGACAAAAGATGATGTGTGGGTGCCCTGTGGACCAAGACAGCCAGGTGCTGTGCAAATTACCATGCAGGAGCTTGCAACAAAGGGACTTGCTGCTAAGATTGTTCCACCCCCAATAACAAGAACTGATTTTGAGAAAGTACTATCAAGGCAGAGGCCAACCGTAAGCAAATCAGACCTTGATGTACACGAGAGATTCACACAGGAGTTCGGAGAAGAAGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_156574.p1 GENE.S_Transcript_156574~~S_Transcript_156574.p1 ORF type:complete len:436 (-),score=101.30,AAA|PF00004.25|7.2e-43,Vps4_C|PF09336.6|3.7e+03,Vps4_C|PF09336.6|9.3e-23,MIT|PF04212.14|2.7e-19,MIT|PF04212.14|8e+03,AAA_5|PF07728.10|4.2e-05 S_Transcript_156574:178-1485(-)
MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKAHLKHEENPKIREAIIQKFTEYLRRAGEIRAVLDEGGGSGPASYGGDAAVAARPNGKPKDGKDDGEGEDAEQSKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESSPSIIFIDEIDSLCVQREGNESEASRCIKTELLVQMQGVGHNDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARHHMFKVHLGDTPHNLTESDFEFLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFYKTKDDVWVPCGPRQPGAVQITMQELATKGLAAKIVPPPITRTDFEKVLSRQRPTVSKSDLDVHERFTQEFGEEG*

Click here to download the sequence:
Link to NCBI Protein BLAST