Transcript Information: S_Transcript_156576.p1


Annotated TAIR IDAT2G27600.1
Annotated Gene NameAAA-type ATPase family protein
Annotated Gene Symbol(s)SKD1, VPS4, ATSKD1
Annotation TypeOrtholog
Chromosome Positionchr2:11781226-11783730 | Forward length=435
E-Value1.3E-116
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 129.60162704234
Replicate 223.478583539815
Replicate 323.867070225836
Condition 2: 8 Hour
Replicate 121.439429837546
Replicate 220.457679772156
Replicate 317.554227439396
Condition 3: 24 Hour
Replicate 124.648504901152
Replicate 226.057323470132
Replicate 324.817412676692


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_156576.p1 GENE.S_Transcript_156576~~S_Transcript_156576.p1 ORF type:complete len:187 (-),score=35.30,Vps4_C|PF09336.6|2.1e-23 S_Transcript_156576:178-738(-)
ATGAAAGAAAATTGTTCTTATGTTTTATGTCTCCAGGGTGTTGGACACTATGATGAAAAAGTTCTTGTTCTTGCTGCAACAAACACTCCGTACGCTCTAGATCAGGCTATTCGACGACGTTTTGATAAGCGTATTTATATCCCTCTACCTGATCTGAAAGCTCGGCATCATATGTTCAAGGTTCATCTTGGGGATACACCACACAACTTGACCGAAAGTGACTTTGAATTCTTAGCTCGTAAAACAGAGGGCTTCTCGGGTTCAGATATATCTGTTTGTGTCAAGGATGTACTTTTTGAACCTGTTCGGAAAACCCAAGACGCCATGTTCTTCTACAAGACAAAAGATGATGTGTGGGTGCCCTGTGGACCAAGACAGCCAGGTGCTGTGCAAATTACCATGCAGGAGCTTGCAACAAAGGGACTTGCTGCTAAGATTGTTCCACCCCCAATAACAAGAACTGATTTTGAGAAAGTACTATCAAGGCAGAGGCCAACCGTAAGCAAATCAGACCTTGATGTACACGAGAGATTCACACAGGAGTTCGGAGAAGAAGGCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_156576.p1 GENE.S_Transcript_156576~~S_Transcript_156576.p1 ORF type:complete len:187 (-),score=35.30,Vps4_C|PF09336.6|2.1e-23 S_Transcript_156576:178-738(-)
MKENCSYVLCLQGVGHYDEKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARHHMFKVHLGDTPHNLTESDFEFLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFYKTKDDVWVPCGPRQPGAVQITMQELATKGLAAKIVPPPITRTDFEKVLSRQRPTVSKSDLDVHERFTQEFGEEG*

Click here to download the sequence:
Link to NCBI Protein BLAST