Transcript Information: S_Transcript_157466.p1


Annotated TAIR IDAT5G46860.1
Annotated Gene NameSyntaxin/t-SNARE family protein
Annotated Gene Symbol(s)VAM3, ATVAM3, SYP22, ATSYP22, SGR3
Annotation TypeOrtholog
Chromosome Positionchr5:19012342-19013795 | Reverse length=268
E-Value2E-34
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 16.0747068036825
Replicate 25.2758844594057
Replicate 33.608361407661
Condition 2: 8 Hour
Replicate 15.3313475792832
Replicate 25.3497898921085
Replicate 35.3289619012453
Condition 3: 24 Hour
Replicate 14.9863321011139
Replicate 25.9122986720906
Replicate 36.305511101279


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_157466.p1 GENE.S_Transcript_157466~~S_Transcript_157466.p1 ORF type:5prime_partial len:92 (-),score=27.15,SNARE|PF05739.15|3.4e-06,MCPsignal|PF00015.17|5e-06 S_Transcript_157466:67-342(-)
TTGGTGCTTTTGGATAATGAAATTTCATTCAATGAAGCCGTAATTGAGGAAAGGGAGCAGGGTATCAAGGACATACAAGAGCAAATTGGTCAAGTTAATGACATATTCAAGGACCTTGCTGTTCTTGTACATGAACAGAGTGTAGTGATTGATGATATTAATTCCAACATTGAGAATTCTGCTGCTGCAACAACCCAAGCGAGACAACAGATCTCTAAAGCTTCTAAGAGTGAAAGAGCAGGTTCAACATGGGTAAGTTGTAAGAGTTCTGAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_157466.p1 GENE.S_Transcript_157466~~S_Transcript_157466.p1 ORF type:5prime_partial len:92 (-),score=27.15,SNARE|PF05739.15|3.4e-06,MCPsignal|PF00015.17|5e-06 S_Transcript_157466:67-342(-)
LVLLDNEISFNEAVIEEREQGIKDIQEQIGQVNDIFKDLAVLVHEQSVVIDDINSNIENSAAATTQARQQISKASKSERAGSTWVSCKSSE*

Click here to download the sequence:
Link to NCBI Protein BLAST