Transcript Information: S_Transcript_157633.p1


Annotated TAIR IDAT5G26780.3
Annotated Gene Nameserine hydroxymethyltransferase 2
Annotated Gene Symbol(s)SHM2
Annotation TypeOrtholog
Chromosome Positionchr5:9418299-9421725 | Forward length=533
E-Value4.9E-55
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 192.339049740247
Replicate 2111.65108654864
Replicate 3123.78988007629
Condition 2: 8 Hour
Replicate 186.270897192038
Replicate 282.877530188078
Replicate 379.93442851868
Condition 3: 24 Hour
Replicate 1167.14645701136
Replicate 2155.72785681627
Replicate 3115.79211295076


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_157633.p1 GENE.S_Transcript_157633~~S_Transcript_157633.p1 ORF type:5prime_partial len:132 (-),score=32.55,SHMT|PF00464.15|7.4e-31 S_Transcript_157633:11-406(-)
TCTGGTGGAACAGAGAACCATTTAGTCTTAGTGAACTTGAAAGACAAGGGTATTGATGGCTCCAGAGTAGAGAAAGTCCTTGAATCTGTTCACATTGCTGCAAACAAAAATACTGTGCCTGGGGATGTGTCCGCAATGGTTCCTGGTGGCATCAGGATGGGAACCCCAGCCCTTACATCTAGGGGTTTTGTCGAAGAAGACTTTGTTAAAGTGGCTGAGTACTTTGATGCTTCTGTGAAGCTGGCTCTAAAAATCAAGGCTGCATCTGCAGGTTCTTCTGTTTCACCCTTTCTCAGCCATGCATGGAATCAATCAATTCTTCATGAACCTCATATGATATGCCATTTATTTATGTCAAAGAAAAAACAATGTTCCAAATGCAGGCACCTAAAATAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_157633.p1 GENE.S_Transcript_157633~~S_Transcript_157633.p1 ORF type:5prime_partial len:132 (-),score=32.55,SHMT|PF00464.15|7.4e-31 S_Transcript_157633:11-406(-)
SGGTENHLVLVNLKDKGIDGSRVEKVLESVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFVKVAEYFDASVKLALKIKAASAGSSVSPFLSHAWNQSILHEPHMICHLFMSKKKQCSKCRHLK*

Click here to download the sequence:
Link to NCBI Protein BLAST