Transcript Information: S_Transcript_158236.p1


Annotated TAIR IDAT3G16500.1
Annotated Gene Namephytochrome-associated protein 1
Annotated Gene Symbol(s)PAP1, IAA26
Annotation TypeHomolog
Chromosome Positionchr3:5612801-5614208 | Reverse length=269
E-Value1E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 137.011458671443
Replicate 225.423346907335
Replicate 317.587774808202
Condition 2: 8 Hour
Replicate 125.138539579137
Replicate 219.112374003475
Replicate 331.762024576959
Condition 3: 24 Hour
Replicate 113.888137848325
Replicate 214.108597934945
Replicate 311.191238245979


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_158236.p1 GENE.S_Transcript_158236~~S_Transcript_158236.p1 ORF type:5prime_partial len:151 (-),score=42.65,AUX_IAA|PF02309.12|3.2e-47 S_Transcript_158236:281-733(-)
GTAGTTTCCTGTTGTTGGCATTTTATTGTAATTGACGATGATGATGATCTGGGTTTGGTGAAGAGGTTTGGTTTGGTGGAGATCAACATGGATGGTGTTCCTATTGGAAGGAAAGTGGACCTAAGCGCATATAACAGCTATGGCAAGCTCTCTACTGCTGTTGATGAGCTCTTTAGAGGGCTTCTTGCAGCTCAAGGGGATTCTTCTGCTGGTGGGATCGATAACAAACAAGAAGAGCAGAAACCAATTACAGGATTATTGGACAGAAGTGGGGAATATACTCTGGTTTATGAAGATAACGAAGGAGACAGGATGCTTGTTGGGGATGTCCCATGGGACATGTTTGTGTCCACTGTCAAGAGACTGCGGGTGTTGAAGAGTTCTGACCTACCCACTTTAAGCCTAGGTGGCAGTAAGGAAGGCAAGGCGCTGGCTGAGAGTGCATCCAAGTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_158236.p1 GENE.S_Transcript_158236~~S_Transcript_158236.p1 ORF type:5prime_partial len:151 (-),score=42.65,AUX_IAA|PF02309.12|3.2e-47 S_Transcript_158236:281-733(-)
VVSCCWHFIVIDDDDDLGLVKRFGLVEINMDGVPIGRKVDLSAYNSYGKLSTAVDELFRGLLAAQGDSSAGGIDNKQEEQKPITGLLDRSGEYTLVYEDNEGDRMLVGDVPWDMFVSTVKRLRVLKSSDLPTLSLGGSKEGKALAESASK*

Click here to download the sequence:
Link to NCBI Protein BLAST