Transcript Information: S_Transcript_15899.p1


Annotated TAIR IDAT3G55530.1
Annotated Gene NameRING/U-box superfamily protein
Annotated Gene Symbol(s)SDIR1
Annotation TypeOrtholog
Chromosome Positionchr3:20595300-20597188 | Reverse length=273
E-Value6.2E-57
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 12.8513929894836
Replicate 23.9397838495562
Replicate 33.8202810458887
Condition 2: 8 Hour
Replicate 13.1988085475699
Replicate 24.6341686468005
Replicate 34.110913466675
Condition 3: 24 Hour
Replicate 13.2767325235891
Replicate 22.5901498944397
Replicate 31.981732060402


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_15899.p1 GENE.S_Transcript_15899~~S_Transcript_15899.p1 ORF type:5prime_partial len:140 (+),score=31.15,zf-RING_2|PF13639.2|6.9e-12,zf-RING_11|PF17123.1|5.9e-09,zf-RING_11|PF17123.1|2.7e+03,zf-C3HC4|PF00097.21|1.3e-07,zf-rbx1|PF12678.3|1.4e-06,zf-C3HC4_2|PF13923.2|2.7e-06,zf-RING_5|PF14634.2|9.1e-06 S_Transcript_15899:2-421(+)
GATTATGAAACTTTAAGAGCACTGGATGCTGACAATGTTCCTACAGTTCCCTCAATGAGTGATGAGGAGATAAATGCTCTACCAGTGCACAAGTATAAGGTTAGCAGTTCCCAAAGTGATGCAGGAGCAGTACAGCAGGCATCATCGTCATCAACATCTCCTCAGAAGCAGCAGGATATTTCCATCAACGTAGGAAGCTCTAAGGGGACCTCCGAAGATGAACTAACTTGTAGTGTTTGCTTGGAGCAAGTAGCTGTGGGCGAACTCATTCGTAGCTTGCCATGTTTACACCAGTACCATGCTAACTGCATTGATCCGTGGCTGAGACAGCAGGGAACATGCCCTGTGTGTAAATTCAAGGTCGGAGCTGGCTGGCATGAAGACGGTCAGGGTGGAGTTGATGCTTCGTTCATTGTCTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_15899.p1 GENE.S_Transcript_15899~~S_Transcript_15899.p1 ORF type:5prime_partial len:140 (+),score=31.15,zf-RING_2|PF13639.2|6.9e-12,zf-RING_11|PF17123.1|5.9e-09,zf-RING_11|PF17123.1|2.7e+03,zf-C3HC4|PF00097.21|1.3e-07,zf-rbx1|PF12678.3|1.4e-06,zf-C3HC4_2|PF13923.2|2.7e-06,zf-RING_5|PF14634.2|9.1e-06 S_Transcript_15899:2-421(+)
DYETLRALDADNVPTVPSMSDEEINALPVHKYKVSSSQSDAGAVQQASSSSTSPQKQQDISINVGSSKGTSEDELTCSVCLEQVAVGELIRSLPCLHQYHANCIDPWLRQQGTCPVCKFKVGAGWHEDGQGGVDASFIV*

Click here to download the sequence:
Link to NCBI Protein BLAST