Transcript Information: S_Transcript_159561.p2


Annotated TAIR IDAT4G10340.1
Annotated Gene Namelight harvesting complex of photosystem II 5
Annotated Gene Symbol(s)LHCB5
Annotation TypeHomolog
Chromosome Positionchr4:6408200-6409496 | Forward length=280
E-Value2E-62
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 13.3974044130018
Replicate 28.6373474012398
Replicate 31.3341553762605
Condition 2: 8 Hour
Replicate 11.1797024430754
Replicate 20.09519935591373
Replicate 30.99776307938211
Condition 3: 24 Hour
Replicate 10
Replicate 28.2939906194293
Replicate 32.4685405162454


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_159561.p2 GENE.S_Transcript_159561~~S_Transcript_159561.p2 ORF type:5prime_partial len:235 (+),score=-33.59,Chloroa_b-bind|PF00504.17|1.6e-44 S_Transcript_159561:2-706(+)
CCCAACCGCAACCTGTACCTGCCCGACGGCCTCCTCGACCGCAGCGCGCTGCCCAACTACCTCGACGGCACCCTGCCCGGCGACTACGGCTACGACCCCCTCGGCCTCGGCGCCGGCGGCAACGTCGAGAAGTACCGCAACGCGGAGCTCATCCACGCCCGCTGGGCGATGCTCGCGGCGGCGGGCATCATCATCCCCGAGGGCCTCGCGCGCAACGGCGCGGAGCTCAAGGGCGCGACGTGGTTCGAGACCGGCGCCGCGATGCTCAACGGCGGCACGCTCAACTACTTTGCCGTGCCGTGGGCGGTCATCAGCAACCCGCTGCCCCTCGCCGCGGTGACGGTGATCGAGGTCGCGCTGCTCGGCGCCGCCGAGAACTACCGGCGCAAGGGCGAGGGCCCCCCGGGGTACAGCCCCGGCTTCGGCAAGTTTGAGGAGGCGGACCTGCGGAACCGGGACAGCTTGTACCCGGGCGGCCCCTTCGACCCCTTGGGCCTCGCCTCCGACCCGGAGGTGTTCCAGGAGCTGAAGGTGAAGGAGATCAAGAACGGGCGCCTCGCGATGGTCTCCGTGCTCGCGTTTGCGCTGCAGGGCTACGTCACCGGCGAGGGGCCCTACGCGAACTGGGCCAAGCACGTCGCCGACCCCTTCGGCTACAACCTGCTGACCATCCTCGTCGGCGACGAGCGCGTGCCGACGCTGTAG

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_159561.p2 GENE.S_Transcript_159561~~S_Transcript_159561.p2 ORF type:5prime_partial len:235 (+),score=-33.59,Chloroa_b-bind|PF00504.17|1.6e-44 S_Transcript_159561:2-706(+)
PNRNLYLPDGLLDRSALPNYLDGTLPGDYGYDPLGLGAGGNVEKYRNAELIHARWAMLAAAGIIIPEGLARNGAELKGATWFETGAAMLNGGTLNYFAVPWAVISNPLPLAAVTVIEVALLGAAENYRRKGEGPPGYSPGFGKFEEADLRNRDSLYPGGPFDPLGLASDPEVFQELKVKEIKNGRLAMVSVLAFALQGYVTGEGPYANWAKHVADPFGYNLLTILVGDERVPTL*

Click here to download the sequence:
Link to NCBI Protein BLAST