Transcript Information: S_Transcript_16161.p1


Annotated TAIR IDAT5G09960.1
Annotated Gene NameFUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RPM1-interacting protein 4, defence response (InterPro:IPR008700); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G64850.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeOrtholog
Chromosome Positionchr5:3106503-3107658 | Forward length=112
E-Value1.3E-38
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 179.37210894703
Replicate 295.218354932432
Replicate 377.545773357361
Condition 2: 8 Hour
Replicate 127.685594446804
Replicate 226.427563890203
Replicate 326.426664866994
Condition 3: 24 Hour
Replicate 157.742031214904
Replicate 261.629663058488
Replicate 358.113950266759


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_16161.p1 GENE.S_Transcript_16161~~S_Transcript_16161.p1 ORF type:5prime_partial len:171 (+),score=27.85 S_Transcript_16161:2-514(+)
AACACGTCACTTTTTGGCCAGCTTCCCAATTTACGCTGTCACTCTGCTGTACTTTCGCTCTCTCTCCCCTGCAAACCCCAGCTTTATAAACCAACTCCCTCTCTCCTTTCTTTCTCATTTCTTCCTCATCACCTTCTAAGCCCTGCAATTCTTCTCCACTTTCCACAACTTATCCCTCTCTCTCTTATAAGTTTAGTCTCTTTTGCTTCTCTAATGGAGGATCGCAAGGAGAAAAATTCACCATGGTTATCCGTGCCACAATTCGGAGACTGGGACCAGAAGGGACCATTGCCAGATTACTCTCTTGATTTCTCAAAAATCAGAGAAATGAGGAAACAGAACAAAAGAGACCCTTCAAGGGCGAGTCTTGGTAATGAAGATGAGTTCATCAGTCCAACTGCTCCTGCTAATAATAAACCAAGCAATGACGACAATCACCATTTTGATCAAAGTCACCCTACAACTACAAGAAAGAGCTTCCTCAGTTACTTCAATTGCTGTGTCAGAGCCTGA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_16161.p1 GENE.S_Transcript_16161~~S_Transcript_16161.p1 ORF type:5prime_partial len:171 (+),score=27.85 S_Transcript_16161:2-514(+)
NTSLFGQLPNLRCHSAVLSLSLPCKPQLYKPTPSLLSFSFLPHHLLSPAILLHFPQLIPLSLISLVSFASLMEDRKEKNSPWLSVPQFGDWDQKGPLPDYSLDFSKIREMRKQNKRDPSRASLGNEDEFISPTAPANNKPSNDDNHHFDQSHPTTTRKSFLSYFNCCVRA*

Click here to download the sequence:
Link to NCBI Protein BLAST