Transcript Information: S_Transcript_161694.p1


Annotated TAIR IDAT5G35695.1
Annotated Gene NameCONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41980.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Annotated Gene Symbol(s)
Annotation TypeHomolog
Chromosome Positionchr5:13869120-13869941 | Forward length=211
E-Value5E-14
Link to Arabidopsis eFP Browser 2.0


Transcripts Per Million


Condition 1: 0 Hour
Replicate 175.972157372225
Replicate 283.725457808005
Replicate 374.559095449086
Condition 2: 8 Hour
Replicate 173.271853910149
Replicate 271.704643076047
Replicate 368.502211106607
Condition 3: 24 Hour
Replicate 184.765616279741
Replicate 284.650304776614
Replicate 381.271031972041


Fold Change




FASTA Sequences

Nucleotide Sequence

>S_Transcript_161694.p1 GENE.S_Transcript_161694~~S_Transcript_161694.p1 ORF type:complete len:117 (-),score=11.59,DDE_Tnp_4|PF13359.2|1.4e-09 S_Transcript_161694:631-981(-)
ATGAAAGGATATTTGGCCCCATTTAAAGGTCAAAAATATCATTTACCTGATTTTCGATGCTCTAGCCAACCTCCAACTGGATTTTGTGAAGTGTTCAATTACAATCATGCATCATTGAGAAATGTAGTTGAGTGCACAATAGGGGTATGGAAAAATCGATGGGCAATTTTGAGAAATATGCAAAGTTTCTCACTTCAAGTGCAAAACAAAATAATCGGAGCTACCATGGCTATACACAATTACATAAGGAGAAATGCATTAGAAGATTTAGAGTTTGACAAGTGCGATGTTGATCCAGATTATATGCCTGATGGGGGAAATGTTGAGACTGATCCTAATATTGTGTGTTAA

Click here to download the sequence:
Link to NCBI Nucleotide BLAST

Protein Sequence

>S_Transcript_161694.p1 GENE.S_Transcript_161694~~S_Transcript_161694.p1 ORF type:complete len:117 (-),score=11.59,DDE_Tnp_4|PF13359.2|1.4e-09 S_Transcript_161694:631-981(-)
MKGYLAPFKGQKYHLPDFRCSSQPPTGFCEVFNYNHASLRNVVECTIGVWKNRWAILRNMQSFSLQVQNKIIGATMAIHNYIRRNALEDLEFDKCDVDPDYMPDGGNVETDPNIVC*

Click here to download the sequence:
Link to NCBI Protein BLAST